Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2481 ATGGATATGAGAACCTCCTCTGCTGCTCCGGTCACAATCAGAATTTTCTGGGATAAAGCGGTCAATCATTTTCGTGATGATTCCCCAGCTTCTGATATTGGCTTGACTTCATCTTTTTTCCCTACCAGCTTGCCGAGAGCTATAATAGCAAGTAACGGATTGAGGTCAGAGGAGCATTTTATGGATTCCAACTCACTTCCCAATTATCAACACCAACATCAGCCCAATTCTGGGTTACTTCGGTTTCGTTCTGCCCCGACTTCGCTTCTTTCAAATTTCACGCAATCCCTTGATTCTGATATCAATAAGAGCAATCATCCATGGGAGACTTCTGAATCCGAGAAATTAATTTCTAGATTCGTTCATAACGATACGGATTCGTCGAGTCTCCAAGAATTCGAAGCCAAAACACCTTTACCACCAACCGAGGCAGCACTGAACCTTATGAACTCCTATAATGGTTTACCCCCCCACTATCCAGGGCATAATTCTACTGCAAGTTCCGCCATGGATAGTTCATATGGGCCGGTGGGTTCATTGGGAATGGATCACCAAACGCAATCGAAGAGCTTCACCTCGAATCTTCTCAGGCGAAGTAGCTCCCCTGCTGGGCTTTTCTCCAACATTTCCTTTCCAAATGGGTTTGCCACCATGAAAGGTGCTGGAAACTACGGTGGGGCAATTGTCAGTAATGGTGAAGTGAGTCCGTCTATGAATAGATTGAATAATCAGTTTAGCTTCTTGCCAAGAAGTGGTTCTTCCCTGGGAATGTTGTCGCAAATTTCTGAGATAGAGAGTGAGAGCATTGGAGCAACTAACCCTGACAATGGGAGGTTGGGATCTAGCAATGGTTATGGTCCTGGATTTCCATACAGCTCCTGGAATGACACGTCCCATCTCTCAGAAAACCTCAGTGGCTTGAAAAGACAGCAAAGTAACAACGACAAGTTATTTTCTGATGCCCAGAGTGGACCGCTCGGAAATCAGGTTCATATATTATCTCATCACTTGAGTTTGCCAAAACCTTCAGCAGATGTAGGTGCTATGGAGAAGTTCCTTCACTTCCCAGATTCCGTTCCTTGTAAAATCAGAGCAAAGCGAGGCTGCGCTACTCATCCTCGAAGCATTGCAGAAAGGGTAAGAAGGACCCGAATCAGTGAACGAATGAGAAAATTACAAGAGCTTGTACCAAACATGGACAAGCAAACAAATACAGCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGAACTTCAGAAACAATTCAAGACCTTGAGTGAAAAGCGGGCAAACTGCAAATGTATAAGCATGCAGAAAGCAGATTCAAATCGTGTTGTTTGA 1344 0.4427 MDMRTSSAAPVTIRIFWDKAVNHFRDDSPASDIGLTSSFFPTSLPRAIIASNGLRSEEHFMDSNSLPNYQHQHQPNSGLLRFRSAPTSLLSNFTQSLDSDINKSNHPWETSESEKLISRFVHNDTDSSSLQEFEAKTPLPPTEAALNLMNSYNGLPPHYPGHNSTASSAMDSSYGPVGSLGMDHQTQSKSFTSNLLRRSSSPAGLFSNISFPNGFATMKGAGNYGGAIVSNGEVSPSMNRLNNQFSFLPRSGSSLGMLSQISEIESESIGATNPDNGRLGSSNGYGPGFPYSSWNDTSHLSENLSGLKRQQSNNDKLFSDAQSGPLGNQVHILSHHLSLPKPSADVGAMEKFLHFPDSVPCKIRAKRGCATHPRSIAERVRRTRISERMRKLQELVPNMDKQTNTADMLDLAVEYIKELQKQFKTLSEKRANCKCISMQKADSNRVV 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2481 447 CDD bHLH_AtbHLH_like 374 427 IPR045239 -
Dere01g2481 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 372 434 IPR036638 GO:0046983
Dere01g2481 447 Pfam Helix-loop-helix DNA-binding domain 374 420 IPR011598 GO:0046983
Dere01g2481 447 Gene3D - 370 441 IPR036638 GO:0046983
Dere01g2481 447 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 85 440 - -
Dere01g2481 447 Coils Coil 409 429 - -
Dere01g2481 447 FunFam Transcription factor bHLH130 family 370 439 - -
Dere01g2481 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 369 419 IPR011598 GO:0046983
Dere01g2481 447 SMART finulus 375 425 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2481 Dere-ChrDere01 39523017 39526891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2481 61 425 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 48.052 2.72e-92 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g2481 HLH 4e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2481 01 39523017 39526891 Dere01g2481 01 39523017 39526891 ECH