Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2480 ATGCTTATCCCTCTCCTCATAGCTTCTGTTTTCATTTGCTTCTCTGCTCCTTTCACCGCCTCGTTGAACTCCGATGGCCTCTCTCTCCTCGCCCTCAAAGCTGCCATCGAGTCCGACCCTTCTGACGTTCTCAGCTCGTGGTCCGACTCTGACTCTACCCCGTGTCGCTGGGCTGGGGTCGTCTGTGCCCACGAGCGAGTCACCCAACTCCTCCTGCCCAACAAAGGCCTAACCGGCTACATCCCCTCTGAACTCGGTTTGCTCAACTCGCTGAAGCAACTCAGTCTTTCTCACAATAACTTCTCCAACGTCATTCCGTCCCGTTTGTTCAACGCGACTAGTCTGGTCGTTCTAGACCTCTCTCAAAATTCCCTGTCTGGTCCAATCCCAACTGAAATTAGGTCTCTAAAGTCCCTCAGACACTTGGATTTATCCTCAAACTCGCTTAATGGGTCTCTCCCTGAAGCTCTATCAGAGCTCACTGACCTCGTCGGAACCTTGAATCTGTCTTACAATAACTTCTTCGGTGGGATCCCGGAGTCTTTCGGGAGACTTCCTGTGATGGTGAGTTTGGATCTCCAGAACAACAATCTGACGGGTAAAATCCCTCAAGTAGGTTCCTTGCTAAACCAGGGTCCTACTGCTTTCTCAGGTAACCCCGGGCTCTGTGGGTTCCCATTGCAGAATGCATGCCCAGAAGCTCAAAATCCCGACATTTTCCCAATCACTGAAGACCCTCAAGACCCCCAAACCCTTAATGCTGGCTTCCCAAGGGGAATTCAAGAAGAGAAGGCGAAAGGGCGAGGTCGTTCCCTTACTGTCCCCATAATTTCCGTCGTCTCGTTGGTGGTAGGGGTTGCTTCGGTGTCTGTGTGGTTGTTCCGAAGGAGATGGACGACTGATGAGAGCAAATTGGAGAAGCAAAAATTAGACAATGAGGTTGACGAGGAAGCAGGAGAAGAGCAGAAAGGTAAATTCGTGATCGTAGACGAAGGGTTTAATATAGAATTGGAGGATTTATTGAGGGCATCAGCGTATGTGGTGGGGAAGAGCAGGAGCGGGATCGTGTATAAGGTGGTGGCTGTCGGGAAGGGATCGTGCCCAGCGGCGAATGTGGTGGCCGTCCGGCGGTTGAGTGAGGGTGACACCACATGGAAGCCCAAGGAATTCGAGGCCGAGGTGGAGGCCATTGGGAGGGTCCATCACCCTAATATCGTCCGCTTGAGAGCTTATTACTATGCAAATGATGAAAAATTAATCATCACTGATTTCATCCGCAATGGAAGCTTGCATATTGCACTTCACGGTGGACCTTCTAATTCATCTTTGCCACCATTATCTTGGGCAGCGAGGTTAAAAATTGCTCAAGGAGCTGCAAGGGGTTTAATGTACATACATGAGTTCAGTGGCCGAAAATATGTCCATGGCAACCTCAAATCAACAAAAATTTTGCTGGACGACGAACTCCATCCTTACATTTCTGGTTTTGGACTCACTCGTCTTGGTTTGAATAACTCAAAGTCTACTACAATGGCACCGAAACGGCAGAATTCAAAACAGTCTATTGCAACCTCTGCAGTGGCAGCTTCCCATAACAACTACTTGGCACCTGAGGTGCGCATTACTGGTGGCAAATTTACTCAGAAATGTGATGTGTATTCTTTTGGAATAGTGCTTTTAGAACTATTGACTGGTCGGCTGCCGGATTCAGGTCCAGAAAATGATGGCAAAGTCCTAGAGAGTTTTGTGAGGCTAGCATTCAGGGAGGAGAAGCCCTTGTGTGAGATTATAGACCCGGCACTTCTGTCTGAGGTTTATGCTAAAAAACAAGTTGTTGCAACATTTCATGTTGCGCTGAACTGCACAGAACATGACCCAGAATTGCGTCCTAGAATGAGAATTGTGTCTGAGAGCCTTGATCGCATCAAAGTACAGTGA 1938 0.4866 MLIPLLIASVFICFSAPFTASLNSDGLSLLALKAAIESDPSDVLSSWSDSDSTPCRWAGVVCAHERVTQLLLPNKGLTGYIPSELGLLNSLKQLSLSHNNFSNVIPSRLFNATSLVVLDLSQNSLSGPIPTEIRSLKSLRHLDLSSNSLNGSLPEALSELTDLVGTLNLSYNNFFGGIPESFGRLPVMVSLDLQNNNLTGKIPQVGSLLNQGPTAFSGNPGLCGFPLQNACPEAQNPDIFPITEDPQDPQTLNAGFPRGIQEEKAKGRGRSLTVPIISVVSLVVGVASVSVWLFRRRWTTDESKLEKQKLDNEVDEEAGEEQKGKFVIVDEGFNIELEDLLRASAYVVGKSRSGIVYKVVAVGKGSCPAANVVAVRRLSEGDTTWKPKEFEAEVEAIGRVHHPNIVRLRAYYYANDEKLIITDFIRNGSLHIALHGGPSNSSLPPLSWAARLKIAQGAARGLMYIHEFSGRKYVHGNLKSTKILLDDELHPYISGFGLTRLGLNNSKSTTMAPKRQNSKQSIATSAVAASHNNYLAPEVRITGGKFTQKCDVYSFGIVLLELLTGRLPDSGPENDGKVLESFVRLAFREEKPLCEIIDPALLSEVYAKKQVVATFHVALNCTEHDPELRPRMRIVSESLDRIKVQ 645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2480 645 Gene3D Phosphorylase Kinase; domain 1 311 424 - -
Dere01g2480 645 SUPERFAMILY Protein kinase-like (PK-like) 347 638 IPR011009 -
Dere01g2480 645 ProSiteProfiles Protein kinase domain profile. 342 645 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2480 645 Gene3D Ribonuclease Inhibitor 165 233 IPR032675 -
Dere01g2480 645 Gene3D Ribonuclease Inhibitor 22 164 IPR032675 -
Dere01g2480 645 Gene3D Transferase(Phosphotransferase) domain 1 425 645 - -
Dere01g2480 645 FunFam Leucine-rich repeat receptor-like protein kinase 138 233 - -
Dere01g2480 645 Pfam Protein tyrosine and serine/threonine kinase 348 636 IPR001245 GO:0004672|GO:0006468
Dere01g2480 645 SMART LRR_typ_2 185 208 IPR003591 -
Dere01g2480 645 SMART LRR_typ_2 88 112 IPR003591 -
Dere01g2480 645 SMART LRR_typ_2 136 160 IPR003591 -
Dere01g2480 645 SUPERFAMILY L domain-like 24 228 - -
Dere01g2480 645 FunFam Leucine-rich repeat receptor-like kinase 27 137 - -
Dere01g2480 645 Pfam Leucine rich repeat N-terminal domain 23 62 IPR013210 -
Dere01g2480 645 PRINTS Leucine-rich repeat signature 136 149 - -
Dere01g2480 645 PRINTS Leucine-rich repeat signature 115 128 - -
Dere01g2480 645 Pfam Leucine rich repeat 90 149 IPR001611 GO:0005515
Dere01g2480 645 Pfam Leucine Rich Repeat 166 185 IPR001611 GO:0005515
Dere01g2480 645 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 10 643 IPR046959 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2480 Dere-ChrDere01 39515039 39518156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2480 22 643 Receptor kinase-like Gene Family AT3G57830 61.659 0.0 749
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Dere01g2480 PK_Tyr_Ser-Thr 2.9e-27 CL0016