Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2478 ATGAGAGGCAATGTAAACATGAGTGTTTGCTCTCCTGTTAGTCTATCTTCGATAAATGCTGTTGTCCTGAAAGGTGGTGCACAGCTGCTAATAAGCAGCAACACGTGTGGTCTTTGGTCCCAAGGAAAGTCCAGTTCATATTCTATCCATTTGTGCCCTGGGAAGTCTGAGTTACAACATGTTGGTCTTTCTGTTTATAAAACATCGTCTTGTCCAACTATGATGGGCCAAACAATCCGGGGAAGTTACTTGGGATCTTGCTTCTCCAAGCAAAGGGAAAACATTCAAGTCCTTGGCTCTGGAGGACCTGAGAGGAGGAATCTTGAAATTTCACTGCCTTGCCAAACTTTGAATGTGAGGCTTTTGGTACCTAAACAAAAACTGCTTCCCAAAGTTAAGTGTAATGTGGGACCAATAACTTGGCCACGTGGATGTGCATCAGCTGGCCTGATTTTTGGATTACTTGTTTGTAATTCAAATTCTCAACCTGCACACGCTGAGACAGATTCTGAGAATGGGAGAAAGAAAGATGAGTGCAATGAGTCATATATTAAATTCTCACATGGGAAGAAAGTTTACACTGACTATTCTGTAATTGGAATACCTGGAGATGGACGATGTTTGTTCCGATCAGTTGCTCATGGGGCTTGTTTGAGGTCTGGAAAACCTCCTCCAAGTGAAAGTCTTCAGAGAGAGCTAGCAGATGAGTTACGGAGCCAAGTTGCTGCTGAGTTTATCAAAAGAAGGGAAGAGACAGAATGGTTTGTTGAAGGTGATTTTGATACTTATGTTTCACAAATTAGGAAGCCCCATGTGTGGGGAGGTGAACCTGAACTGTTCATAGCTTCACATGTCCTGCAGATGCCAATCACAGTATACATGTACGATAAAGATGCAGGTGGTTTGATATCTATTGCTGAGTATGGCCAAGAATATGGGAAGGAAAACCCAATCAGGCTTCTTTATCATGGCTTTGGACATTATGATGCGTTAGAGATTCCAGGAAGGAAGGGTCTTAAATCAAGACTCTAG 1032 0.4254 MRGNVNMSVCSPVSLSSINAVVLKGGAQLLISSNTCGLWSQGKSSSYSIHLCPGKSELQHVGLSVYKTSSCPTMMGQTIRGSYLGSCFSKQRENIQVLGSGGPERRNLEISLPCQTLNVRLLVPKQKLLPKVKCNVGPITWPRGCASAGLIFGLLVCNSNSQPAHAETDSENGRKKDECNESYIKFSHGKKVYTDYSVIGIPGDGRCLFRSVAHGACLRSGKPPPSESLQRELADELRSQVAAEFIKRREETEWFVEGDFDTYVSQIRKPHVWGGEPELFIASHVLQMPITVYMYDKDAGGLISIAEYGQEYGKENPIRLLYHGFGHYDALEIPGRKGLKSRL 343
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2478 343 ProSiteProfiles OTU domain profile. 196 334 IPR003323 -
Dere01g2478 343 CDD OTU_plant_OTU4-like 195 331 - -
Dere01g2478 343 FunFam OTU domain-containing protein 180 338 - -
Dere01g2478 343 SUPERFAMILY Cysteine proteinases 195 331 IPR038765 -
Dere01g2478 343 PANTHER HIV-INDUCED PROTEIN-7-LIKE PROTEASE 20 333 - -
Dere01g2478 343 Gene3D - 165 340 - -
Dere01g2478 343 Pfam OTU-like cysteine protease 202 328 IPR003323 -
Dere01g2478 343 ProSitePatterns EF-hand calcium-binding domain. 296 308 IPR018247 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Dere01g2478 Dere-ChrDere01 39510598 39512922 Dispersed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2478 201 338 C2H2 Transcription Factor Family AT1G50670 28.777 1.12e-06 47.0