Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2476 ATGGATCAAACTACAGGAGGTTTCCCTGGATCCAGTCCCACTGTTCGCCAACATGATGAGGTCGCACTTGAATCCATTCAATTCGCTGAGCAAATCCAGCGAATCGTAGCCCCAGCCCCGGAAAACGTTGGCTCATTCACTGCGCTTCTCGAACTTCCCACACTGCAAGCCATGGAGATCCTTAACTCTCAGATCTCTGGCGGAGCCGCCGCTGCGACCGGCGCATTCGAGGAACCCTTATGCCATATCAACGGTCAGAAACCCCGTATATTTCGGTCTCTCAATCGCAATTTAACCTTCCCTTCTAACACTGCTTTGATCGAAGGCGCCGCCAAGTTTTCCGTTTTCGCCGAAGAGAACTCGTCACCGGAGGAGGGTAGCTTGGCTCCACCTAATTCAGGTGCAAATTTAAATAGAGTGAAGTATGAACCCCCAGAAATCGATTCGAATCCGAGTTCAACCCATGGAATCGTTTCTGATTCCGCAATTGAGAACAAAAATGGGAGGGCCGCAAAGAGAAAGGAGCGAGAGAAGAAGGTTAAAGGGTCCTCAAAGAAGAGTAAAAGCGTCGCCGACGAGACATCCGGAGATGCTGAGAAGCTTCCGTACGTTCATGTTCGAGCTCGTCGAGGTCAAGCTACAGACAGCCATAGCTTGGCAGAAAGGGCCAGGAGAGAGAAGATAAACGATCGTATGAAGCTTTTACAGGAGCTGGTCCCCGGCTGCAATAAGATTTCAGGAACAGCATTGGTTCTGGATGAAATCATCAACCATGTTCTATCTCTTCAACGTCAAGTGGAGTTCTTATCAATGAAACTGGCAGCAGTTAACCCAAGAATTGATTTCAACCTTGACAGCATATTGGCTACTGAAGGTACATCTCTAGTGGACAGTTACTTTCCCAGCATGATTACACCTCTAGCAAGGCCAGAAGTGCCAGCCAACGGAGACAGTCAACAATATCAACAACAGTGGCAATTAGATGCATTTAATCAACCAATTTGGGGGAGGGAAGAAGAGAACCATAGTTTCATGACCCCAGATAATTCTCTCTTGAGTTATGACTCATCGGCAAATTCAGGTAGATTAGAGTTATTCTACTACCGCATGTGTCTCTTCCCTAAAGACATCTTCCACACTAAAATTTTTAAACTGCAGTCTGTCATGGTTCTCGCTGCCATTGACATTGGGTTCAAAAAATAA 1203 0.468 MDQTTGGFPGSSPTVRQHDEVALESIQFAEQIQRIVAPAPENVGSFTALLELPTLQAMEILNSQISGGAAAATGAFEEPLCHINGQKPRIFRSLNRNLTFPSNTALIEGAAKFSVFAEENSSPEEGSLAPPNSGANLNRVKYEPPEIDSNPSSTHGIVSDSAIENKNGRAAKRKEREKKVKGSSKKSKSVADETSGDAEKLPYVHVRARRGQATDSHSLAERARREKINDRMKLLQELVPGCNKISGTALVLDEIINHVLSLQRQVEFLSMKLAAVNPRIDFNLDSILATEGTSLVDSYFPSMITPLARPEVPANGDSQQYQQQWQLDAFNQPIWGREEENHSFMTPDNSLLSYDSSANSGRLELFYYRMCLFPKDIFHTKIFKLQSVMVLAAIDIGFKK 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2476 400 MobiDBLite consensus disorder prediction 182 202 - -
Dere01g2476 400 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 133 356 IPR024097 GO:0006355
Dere01g2476 400 Gene3D - 209 282 IPR036638 GO:0046983
Dere01g2476 400 MobiDBLite consensus disorder prediction 121 202 - -
Dere01g2476 400 CDD bHLH_AtBPE_like 202 287 - -
Dere01g2476 400 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 212 262 IPR011598 GO:0046983
Dere01g2476 400 Pfam Helix-loop-helix DNA-binding domain 216 263 IPR011598 GO:0046983
Dere01g2476 400 MobiDBLite consensus disorder prediction 147 161 - -
Dere01g2476 400 SMART finulus 218 268 IPR011598 GO:0046983
Dere01g2476 400 FunFam transcription factor bHLH48-like isoform X1 209 281 - -
Dere01g2476 400 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 210 281 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2476 Dere-ChrDere01 39465210 39470461 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2476 5 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G57800 54.167 8.43e-98 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g2476 HLH 5.4e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2476 01 39465210 39470461 Dere02g1391 02 13427395 13430833 CCT
Dere01g2476 01 39465210 39470461 Dere01g2476 01 39465210 39470461 ECH