LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g2473	ATGACCCAAAATGTGGTTCTGGGTGTGCCCGGACGAATTAGTCATAGAAACGTACGAAAGAGTCAAGAGATTACCAGGAATGTGATGGAAGCTAATAGGAGTGGAGAACATGGTCGAACACATCGGAAACCACGTCTTAAGACTTCTGAGTACATTGGAGTTAGCAGGCACGCAAGTCGTTGCGAAGCATTTGTGTGGGACAACACCAGTAATAACCCTGGAGAGAGAGGAAAAACGGGTGGTTTTGTGGATGAAGTCGATGCAGCTAGAGCTCGTGATTTGTTTGCCATTAAGATATGGGGCCAGTCTACTCCTACCAATTTTCCTGTGAGTACCTATGAGAAAGAACTGTGGGAAATGAAGAATATGGACAGGGATAAGTGTCTTATTGCTATTAGAAGGATGGGTAACACTAAAAAGAGAAGGAGCATTTCTCGGGGCCTCTCTGCTTATCGTGGAGTTACTAGGAAGTTGGAGCAGAAGAAATGGCAAGCCAGGTTGGGCAAAGGTAAAGGAATACGAGGCATTTACTTAGGCACATTTGATACGGAGGAGGAGGCAGCCAATGCTTACGATATAGCGTCAATAAGATTGAAGGGCCCCAAGTCACCTACTAATTTTGATCTCAAACATTATGATGCCCAAAGCATTCTCAATAATCCTATGATTCCAATCGGTAAGGGTGCTTCCAAGTTGCTCCAGAATTACACAGCCCATCATATTCTTTCACATATCAGTCACAACAACAAAATCCTCAACCCTAGTCTCATCCCTACCGATTCAGCCGGCAACCACACGGCATCATTTCGAGACCAAAGATTCCCAGAAGGGTGTTCTGTGTCAACAATACAGTTGGAAGATGATACAGAAACTTTATGGAATGATATGCATGGGGAGTCTTTAATGGATCATATGCTGAATCAAAGTATTGATTGGAGTACGGCGGATTTTGACTGGAGTTTTACTTGGGACGAGTCTCTTGTGAATCTACAAGAATCTGGGTTCCACCATGTGGGTCACACTAACGTTTCAAGCTCCATTGAATTCCCATCTTGTGCTACCCAAATGTAA	1071	0.4388	MTQNVVLGVPGRISHRNVRKSQEITRNVMEANRSGEHGRTHRKPRLKTSEYIGVSRHASRCEAFVWDNTSNNPGERGKTGGFVDEVDAARARDLFAIKIWGQSTPTNFPVSTYEKELWEMKNMDRDKCLIAIRRMGNTKKRRSISRGLSAYRGVTRKLEQKKWQARLGKGKGIRGIYLGTFDTEEEAANAYDIASIRLKGPKSPTNFDLKHYDAQSILNNPMIPIGKGASKLLQNYTAHHILSHISHNNKILNPSLIPTDSAGNHTASFRDQRFPEGCSVSTIQLEDDTETLWNDMHGESLMDHMLNQSIDWSTADFDWSFTWDESLVNLQESGFHHVGHTNVSSSIEFPSCATQM	356

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g2473	356	Pfam	AP2 domain	150	200	IPR001471	GO:0003700\|GO:0006355
	Dere01g2473	356	SUPERFAMILY	DNA-binding domain	50	111	IPR016177	GO:0003677
	Dere01g2473	356	SMART	rav1_2	150	214	IPR001471	GO:0003700\|GO:0006355
	Dere01g2473	356	SMART	rav1_2	50	115	IPR001471	GO:0003700\|GO:0006355
	Dere01g2473	356	ProSiteProfiles	AP2/ERF domain profile.	50	109	IPR001471	GO:0003700\|GO:0006355
	Dere01g2473	356	ProSiteProfiles	AP2/ERF domain profile.	150	208	IPR001471	GO:0003700\|GO:0006355
	Dere01g2473	356	CDD	AP2	149	208	IPR001471	GO:0003700\|GO:0006355
	Dere01g2473	356	Gene3D	AP2/ERF domain	150	210	IPR036955	GO:0003700\|GO:0006355
	Dere01g2473	356	Gene3D	AP2/ERF domain	50	112	IPR036955	GO:0003700\|GO:0006355
	Dere01g2473	356	SUPERFAMILY	DNA-binding domain	149	209	IPR016177	GO:0003677
	Dere01g2473	356	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	32	227	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g2473	Dere-ChrDere01	39343415	39347272	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g2473	47	234	AP2-EREBP Transcription Factor Family	AT1G51190	49.231	3.43e-53	182

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere01g2473		AP2	6.5e-09	CL0081