Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2470 ATGTTGGAATGCATACTTCGTCTTCGTCTAGTAGTCGGATGGCTTGTTAGGAAATATATTGGTAATATATTTGAAGAAAATATGAACACAGCCTTTAATTCGAGTGATCTGCTTCCAAAGCCCTTTCAGAAGATCACAATGGCGAAGAAGAAAAAGGCTAGGGTTTCCGATGATGAAAGTATTGGATCCAAGCAAGAAGCGGAGAACGAGAATCAGAATCGAAGTTCCTCCACGGAAAAGAGCCTCTACGAGGTTCTTGGTGTGGAGAGAACAGCATCTCAACAAGAAATAAAGAAAGCATACTACAAGTTAGCATTGCGGCTCCATCCTGATAAGAACCCTGGTGATGAGGAAGCCAAAGAGAAATTTCAGCAATTGCAAAAAGTAATATCAATTCTTGGGGATGAAGACAAACGGGCTCTTTATGATCAGACTGGTTGTGTTGACGATGCTGACCTTGCAGGGGAAGTTGTTCAGAATCTTCATGAGTTTTTCAGAACAATGTACAAGAAGGTCACTGAAGCTGATATTGAGGAGTTTGAAGCAAAGTATAGGGGATCTGACTCTGAGAAAAATGATTTGATCGATCTGTACAAAAAGTGCAAGGGTAATATGAACAGGCTTTTCTGTTCAATGCTTTGTTCAGATCCTAAACTTGACTCGCATCGTTTCAAGGATATTCTTGATGAGGCTATAGCTGCTGGAGAACTGCAGTCAATGAAAGCCTACCGGAAATGGGCGAAGAAAGTTGATGAAATCAAACCACCAACTAGTCCTTTAAAGGGAGCAAAGTCAAAGAAGCAGCCAGGGACAGATCTGTATGCAATCATATCACAACGCCGAAATGAGAGGAAAGGCCAGTTTGATTCGATGTTCACATCTCTAGTTTCTAAATATGGAGGAGGCGATACACCGGAGCCCACCGAAGAAGAGTTTGAAGCTGCACAGAGAAAACTTGAAAGCCGAAGGCAGTCAAAAAAATTAAAGCGGAACTAA 996 0.4167 MLECILRLRLVVGWLVRKYIGNIFEENMNTAFNSSDLLPKPFQKITMAKKKKARVSDDESIGSKQEAENENQNRSSSTEKSLYEVLGVERTASQQEIKKAYYKLALRLHPDKNPGDEEAKEKFQQLQKVISILGDEDKRALYDQTGCVDDADLAGEVVQNLHEFFRTMYKKVTEADIEEFEAKYRGSDSEKNDLIDLYKKCKGNMNRLFCSMLCSDPKLDSHRFKDILDEAIAAGELQSMKAYRKWAKKVDEIKPPTSPLKGAKSKKQPGTDLYAIISQRRNERKGQFDSMFTSLVSKYGGGDTPEPTEEEFEAAQRKLESRRQSKKLKRN 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2470 331 ProSiteProfiles dnaJ domain profile. 81 146 IPR001623 -
Dere01g2470 331 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN-RELATED 67 330 IPR042977 -
Dere01g2470 331 MobiDBLite consensus disorder prediction 50 79 - -
Dere01g2470 331 Gene3D DnaJ domain 64 160 IPR036869 -
Dere01g2470 331 CDD DnaJ 83 135 IPR001623 -
Dere01g2470 331 MobiDBLite consensus disorder prediction 296 331 - -
Dere01g2470 331 SMART dnaj_3 80 138 IPR001623 -
Dere01g2470 331 MobiDBLite consensus disorder prediction 50 65 - -
Dere01g2470 331 PRINTS DnaJ domain signature 118 138 IPR001623 -
Dere01g2470 331 PRINTS DnaJ domain signature 101 116 IPR001623 -
Dere01g2470 331 PRINTS DnaJ domain signature 138 157 IPR001623 -
Dere01g2470 331 PRINTS DnaJ domain signature 83 101 IPR001623 -
Dere01g2470 331 Pfam DnaJ domain 82 143 IPR001623 -
Dere01g2470 331 SUPERFAMILY Chaperone J-domain 78 162 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2470 Dere-ChrDere01 39300064 39304191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2470 75 143 C2H2 Transcription Factor Family AT1G74250 39.189 2.31e-08 53.5