Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2469 ATGGAGACCGATAATGGTCATACCAAGTCAAAGATGGAAGACTATGACGTGATAGAGCAAATTGGCAGAGGAGCATTCGGCGCTGCCTTTCTCGTCCTCCACAAGTCTGAGAAAAAGAAGTATGTGCTGAAGAAGATTCGCTTGACCAAGCAAACCGAGAAATTTAAACATACAGCGCACCAGGAGATGGACCTGATTGCAAAATTAAATAACCCATATATCGTGGAGTACAAAGATGCTTGGGTGGAAAAGGAGGACTACATATATATCATAACTGGCTATTGTGAAGGAGGTGACATGGCTGAGTTCATAAAGAGAGCCCGAGGATCTTTTTTTCCTGAGGAGAGGATCTGCAAATGGCTGACTCAATTATTGCTAGCTGTGGACTACTTGCACTCTAATCGTGTACTCCACAGAGATCTTAAGTGTTCCAACATATTCCTCACCAAAGATAATGACATTCGACTAGGTGACTTTGGTCTTGCAAAGCTACTTAACAAAGAAGACCTTGCTTCATCGGTTGTTGGAACTCCAAACTACATGTGTCCTGAGCTCCTTGCAGATATACCTTATGGTTATAAATCTGATATATGGTCACTCGGTTGTTGCATGTTTGAAATTGCTGCACATCAACCAGCATTTCGTGCTCCGGATATGGCTGGACTTATCAATAAGATAAATAGATCCTCCATTTCTCCACTGCCAATAGTTTATTCTTCCACACTGAAACAAATTATCAAGAGCATGCTGAGGAAAAACCCTGAACATAGACCAACAGCTCTGGAATTGTTAAGGCATCCTCATTTACAACCATATGTCCTCCGCTGTCGTAATGCATCAGCTGTCCTTCTTCCAATAAAACCAATAAGTAGCCCAAAGGATAAAATGAAAAGATCTTATCGGTCTATTGGTGGCAAAGACCATAGGGACAAAGAAGTAGGATTAACAAATCATTTAGAACGGGTTCATCCATTTGAGGGAAATGGCAATGTACATCCAAGCATTCTTCCTAATGATGGCAACCGAAAAGTCTCAACCAGTGTAGAAGACAATCTTGAGACCAAGATGGTTGACCCCACCAGTTACATAGTGGAATCATATTCTAGTTTCAATGGCTCAAAAGACGGTTCTACAACATCCGAATCAACTAATGGCAGTGTGTTCAAGGAAGCAGACTCTAAAAATAGACCTGCAAGTGAAACAGCTGAAAATGAAATTACATCAAAAACACTTACAGATTCTGAGCATGAAGAACAAGGATTGAATGCTGAACTTTCTCAGAAGTCAGAAAGAATTGACATAAATGCAGTGGCCACAAAAGTTGAAGATGCTTATTTCAATGATGGTGTCAATAATGCTAAGGGACAGAGAGAAGATACCATGCCTGAGGACCTCAAGAAATCAATAACGTCCTGTGCAGGTAGCACTGATGAAAACGGATCCTTTGATGAGGAAACGTTAACACCACCAACCATGCAGCCTATTAGGGTTGAAGAGGACACTGAACCTGGAAGCTGCTTAAAGAAAAGCGAAAATGCCAATGCATATACCGAAGGCCCTCACTTAGATTGTTTGTCTTCTGAGACTAATGATCAACTTGCAGGTAAAGATGAAGGCCAGGCAAAAACATGTAACACCAGTTGCTCCATGCATAAAGAAAATGAAAGTGCTTGCGTGGTTGATCAGACAACAAGTGAGCTTTCGTTAAGTGCACTAACCGTAATTGGTGGTGATGAAACCAAGAATGTGCTGAATAGTCCATGCCAGCAAAGAGCTGATGCTCTGGAGTCTCTGCTTGAGTTGTGTGCCCAGTTACTTAAGCAGGACAAACTGGATGAGCTTGCTGGTGTGCTAAGACCTTTTGGGCATGAAGCTGTCTCATCCAGGGAAACAGCAATATGGTTGACAAAGAGCCTCATGTCTGCCCAGAAATTTAACAGAGAAACCTAG 1950 0.419 METDNGHTKSKMEDYDVIEQIGRGAFGAAFLVLHKSEKKKYVLKKIRLTKQTEKFKHTAHQEMDLIAKLNNPYIVEYKDAWVEKEDYIYIITGYCEGGDMAEFIKRARGSFFPEERICKWLTQLLLAVDYLHSNRVLHRDLKCSNIFLTKDNDIRLGDFGLAKLLNKEDLASSVVGTPNYMCPELLADIPYGYKSDIWSLGCCMFEIAAHQPAFRAPDMAGLINKINRSSISPLPIVYSSTLKQIIKSMLRKNPEHRPTALELLRHPHLQPYVLRCRNASAVLLPIKPISSPKDKMKRSYRSIGGKDHRDKEVGLTNHLERVHPFEGNGNVHPSILPNDGNRKVSTSVEDNLETKMVDPTSYIVESYSSFNGSKDGSTTSESTNGSVFKEADSKNRPASETAENEITSKTLTDSEHEEQGLNAELSQKSERIDINAVATKVEDAYFNDGVNNAKGQREDTMPEDLKKSITSCAGSTDENGSFDEETLTPPTMQPIRVEEDTEPGSCLKKSENANAYTEGPHLDCLSSETNDQLAGKDEGQAKTCNTSCSMHKENESACVVDQTTSELSLSALTVIGGDETKNVLNSPCQQRADALESLLELCAQLLKQDKLDELAGVLRPFGHEAVSSRETAIWLTKSLMSAQKFNRET 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2469 649 MobiDBLite consensus disorder prediction 369 426 - -
Dere01g2469 649 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 12 599 - -
Dere01g2469 649 SMART serkin_6 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2469 649 FunFam Serine/threonine-protein kinase Nek6 1 94 - -
Dere01g2469 649 FunFam serine/threonine-protein kinase Nek6 isoform X2 95 283 - -
Dere01g2469 649 Pfam Protein kinase domain 15 268 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2469 649 CDD STKc_Nek 14 269 - -
Dere01g2469 649 ProSitePatterns Protein kinases ATP-binding region signature. 21 44 IPR017441 GO:0005524
Dere01g2469 649 ProSiteProfiles Protein kinase domain profile. 15 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2469 649 Gene3D Transferase(Phosphotransferase) domain 1 95 281 - -
Dere01g2469 649 SUPERFAMILY Protein kinase-like (PK-like) 12 302 IPR011009 -
Dere01g2469 649 Gene3D Phosphorylase Kinase; domain 1 1 94 - -
Dere01g2469 649 MobiDBLite consensus disorder prediction 409 424 - -
Dere01g2469 649 MobiDBLite consensus disorder prediction 369 390 - -
Dere01g2469 649 MobiDBLite consensus disorder prediction 323 345 - -
Dere01g2469 649 ProSitePatterns Serine/Threonine protein kinases active-site signature. 136 148 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2469 Dere-ChrDere01 39292506 39297448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2469 9 270 MAP Kinase Kinase Kinase AT3G13530 32.830 2.93e-37 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Dere01g2469 Pkinase 2.4e-67 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2469 01 39292506 39297448 Dere02g1398 02 13490807 13495557 CCT
Dere01g2469 01 39292506 39297448 Dere01g2469 01 39292506 39297448 ECH