Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2465 ATGGCTGACCCTTACTCCAATTTCTTCTCTTCACCTTCTTTCTTCAAATTCAACCATTACCCTTCTTCCAATTCTTCTTCTCACCATCCCTATCTCCACAACTTCATCAACCACAGCACCTCCACCTCTGCCACCACCTTCTTCCACTACTACCACCACCACCAAGCCTCTTCGTATTCTTCCATATCTTCTTCACCCCCTTCTCCTCCTCTCAGAGAAGCTCTTCCGCTTCTGAGCCTTAGCCCAAGCAAGCAGGAGCAAGATCATCGTCGTGATCAAGAGATGGATGTGAAGGAGAGGATGATCCTCCACAGTGCTAAACCCAAGGAGGAAGACGATGAGGAAGAGGAGGAGGATGAGGCCAGTGTGACTGTTGCACTCCACATAGGGTTGCCCAGCCCTAGTGCTGCCGAGATGGCTTCTGTGCTCTCATCTTCTAATAATAAAGACCAAGAAGAAGGAGATGGAGATGGTTGTGGTGGTGGTGGGGATGAGGATTGTTCTGGCTCTGGCTTGATGCTCCACAATAAGCTCAACAAGGGACAGTACTGGATCCCTACTCCTTCTCAGATTCTCATTGGTCCTACCCAGTTCTCCTGCCCTGTTTGCTTCAAGACCTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCACAGTACAGAAAAGGGCCTGAATCTCTGAGGGGTACACAACCAACGGGCATGCTGAGGCTTCCTTGCTATTGTTGCGCTCCAGGGTGCAGAAACAACATCGACCACCCAAGAGCGAAGCCACTCAAGGATTTTAGAACACTCCAAACGCATTACAAGAGGAAGCATGGGATCAAGCCCTTCATGTGCAGAAAATGTGGAAAGGCTTTTGCTGTGAGAGGGGATTGGAGAACCCATGAGAAGAACTGTGGGAAGCTGTGGTATTGTATCTGTGGCTCTGATTTCAAGCACAAGAGGTCGCTTAAGGATCACATCAAGGCCTTCGGGACTGGCCATGCTGCATATGGGATCGATGGGTTTGAAGAAGAAGATGACCCTGCGTCTGAAGTAGAGCAAGATAACGAGTCAACCCAGTAA 1080 0.4926 MADPYSNFFSSPSFFKFNHYPSSNSSSHHPYLHNFINHSTSTSATTFFHYYHHHQASSYSSISSSPPSPPLREALPLLSLSPSKQEQDHRRDQEMDVKERMILHSAKPKEEDDEEEEEDEASVTVALHIGLPSPSAAEMASVLSSSNNKDQEEGDGDGCGGGGDEDCSGSGLMLHNKLNKGQYWIPTPSQILIGPTQFSCPVCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTGMLRLPCYCCAPGCRNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCGKAFAVRGDWRTHEKNCGKLWYCICGSDFKHKRSLKDHIKAFGTGHAAYGIDGFEEEDDPASEVEQDNESTQ 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2465 359 SUPERFAMILY beta-beta-alpha zinc fingers 264 302 IPR036236 -
Dere01g2465 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 282 302 IPR013087 -
Dere01g2465 359 Gene3D Classic Zinc Finger 245 335 - -
Dere01g2465 359 MobiDBLite consensus disorder prediction 136 164 - -
Dere01g2465 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 198 225 IPR013087 -
Dere01g2465 359 ProSitePatterns Zinc finger C2H2 type domain signature. 200 220 IPR013087 -
Dere01g2465 359 PANTHER ZINC FINGER PROTEIN WIP2 38 356 IPR043584 GO:0003700|GO:0010468
Dere01g2465 359 FunFam zinc finger protein WIP2-like 197 220 - -
Dere01g2465 359 SMART c2h2final6 198 220 IPR013087 -
Dere01g2465 359 SMART c2h2final6 282 302 IPR013087 -
Dere01g2465 359 MobiDBLite consensus disorder prediction 58 123 - -
Dere01g2465 359 FunFam Zinc finger protein WIP2 251 333 - -
Dere01g2465 359 Gene3D Classic Zinc Finger 197 220 - -
Dere01g2465 359 MobiDBLite consensus disorder prediction 84 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2465 Dere-ChrDere01 39244368 39246551 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2465 1 359 C2H2 Transcription Factor Family AT3G57670 63.239 6.34e-154 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g2465 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2465 01 39244368 39246551 Dere02g1402 02 13527272 13529523 CCT
Dere01g2465 01 39244368 39246551 Dere01g2465 01 39244368 39246551 ECH