Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2460 ATGGATTCTTGCAGAAAGTCTCCCTCAAAGCCATGGAAGAAAGGGCCAAGCAGGGGGAAAGGTGGCCCTCAGAATGCTTCATGCGAGTATCGAGGTGTTCGTCAGAGAACATGGGGAAAATGGGTCGCTGAGATAAGAGAGCCAAAGAAGAGAACGAGGCTATGGCTTGGTTCTTTTGCCACAGCTGAAGAAGCTGCCATGGCTTATGATGAAGCTGCAAGGAGACTCTATGGACCAGATGTTTACCTTAATCTTCCCCACCTTCAACCCACCTCCAGTTCTCCTATCAAATCCCAAAAGTTCAAATGGTTGCCTTCCAAGAATTGCATTTCAATGTTTCCTTCTAGTGGATTGCTCAATATTAATGCCCAACCTAGTGTTCACGTAATCCATCAGAGGCTACAACAACTCAAGCAGAGTGGGATTCTAAGTCAAACTCCCTCTAATTCATCATGTGATCCAGAGGCTGATCTTCAGGTTATAGGAAGTAAACATAATGCAGAAAATCCTCTAACCGAAAAGGATGCTATAACATCATCAGAAACGATACTTGGAGATATTCAGGAGAAACCCCAGATTGATCTCCATGAGTTTCTTCAACAGCTGGGGATTCTGAAGGATGATAAACAGTCAGAGAGAACTTATAGCTCAGCAAGTTCCACACAGCCTGAAACTTTATCAAGAGATGAAAGTGTTAAATTTGGAGATTGTTCTGACAAGAGTGTCAACTGGGAAGAATTGATCGAGATGGATGAAATTGCAGATAATCAGGGAACAGAAGCAACACAATTTCAAGCATATGACATAAATGAAGAGCTCACTTTCTCCACTTCAAGTTGGAACTTCTAA 849 0.4264 MDSCRKSPSKPWKKGPSRGKGGPQNASCEYRGVRQRTWGKWVAEIREPKKRTRLWLGSFATAEEAAMAYDEAARRLYGPDVYLNLPHLQPTSSSPIKSQKFKWLPSKNCISMFPSSGLLNINAQPSVHVIHQRLQQLKQSGILSQTPSNSSCDPEADLQVIGSKHNAENPLTEKDAITSSETILGDIQEKPQIDLHEFLQQLGILKDDKQSERTYSSASSTQPETLSRDESVKFGDCSDKSVNWEELIEMDEIADNQGTEATQFQAYDINEELTFSTSSWNF 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2460 282 Pfam AP2 domain 28 78 IPR001471 GO:0003700|GO:0006355
Dere01g2460 282 ProSiteProfiles AP2/ERF domain profile. 29 86 IPR001471 GO:0003700|GO:0006355
Dere01g2460 282 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 4 248 - -
Dere01g2460 282 MobiDBLite consensus disorder prediction 214 228 - -
Dere01g2460 282 PRINTS Ethylene responsive element binding protein signature 30 41 IPR001471 GO:0003700|GO:0006355
Dere01g2460 282 PRINTS Ethylene responsive element binding protein signature 52 68 IPR001471 GO:0003700|GO:0006355
Dere01g2460 282 SMART rav1_2 29 92 IPR001471 GO:0003700|GO:0006355
Dere01g2460 282 SUPERFAMILY DNA-binding domain 29 87 IPR016177 GO:0003677
Dere01g2460 282 MobiDBLite consensus disorder prediction 1 29 - -
Dere01g2460 282 CDD AP2 28 88 IPR001471 GO:0003700|GO:0006355
Dere01g2460 282 Gene3D AP2/ERF domain 29 87 IPR036955 GO:0003700|GO:0006355
Dere01g2460 282 FunFam Ethylene-responsive transcription factor 2 28 87 - -
Dere01g2460 282 MobiDBLite consensus disorder prediction 210 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2460 Dere-ChrDere01 39152144 39152992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2460 5 282 AP2-EREBP Transcription Factor Family AT3G57600 52.128 1.30e-86 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g2460 AP2 1.9e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2460 01 39152144 39152992 Dere02g1408 02 13586612 13587460 CCT
Dere01g2460 01 39152144 39152992 Dere01g2460 01 39152144 39152992 ECH