Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2454 ATGCTTGAACTGGAGGCGTGTCTGATTAGACCACCATTCTTGCTATGTATCTTCATTGGCTTCTTGCTACATTTGGTTTTCACTGCTGAAATTCCATTGAGTTCAAAACTTTCTGTGGCTGACAATGATTGTTGGGTCTCCACCAATGGTGATTTTGCATTAGGTTTTTCTAACATTTCAGATCAACCCAACCAGTACAGTATTGGCATTCGTTTCAATTCAAAGTCCATACCATTTAGCCAACAAACTGTGGTCTGGGTTGCTGGAGCTCAAGTCACTGTGGGTAACAGGTCCTATTTCCAACTCACCCCGGAAGGAGAACTAGTCCTCTTTGATTCATTACAGGAAGTCCTTGTATGGACGAGTGAAACCGCCAATCAATCTGTAGTTTCAGCTGCAATTCATGATAATGGCAATCTTGTGCTATTAGACAAAGAAGAACATGTTATTTGGCAGAGTTTTGATTATCCATCTGATACACTTCTTCCAGGGCAAAGCTTATCTGTGGATCATATACTTCGAGCTGCAAGCAAGAAAACCACATCCAGTTATTACAGTCTTTACATGAATGCCTCAGGACAGATACAACTTCGGTGGGAAAGTAATATTATCTATTGGACAAGTGATAGCCCTTCTATAGCAAATCTTAGTGCTTTTCTTACCTCCAATGGAGCCCTGCAACTTCGGGACCAAAGTTCAAAACCTGTTTGGTCAGTGTTCAGTGATGACCACAATGACTCTGTGAATTATCGGTTTCTTAGGCTTGATTTGGATGGCAATCTGCGCATATATTCATGGATAGAAACTTTGCAGTCATGGAGATCAGTCTGGCAAGCTGTTGAGAATCAGTGCAAGGTCTTTGCAACCTGTGGTCAACATGGAATCTGCGTCTTAACTGCTTCAGGTACTGCTGATTGCAGATGCCCATTTGATGTAGCTGAGCTTAACAAATGTTTGGTTCCATACAAGGAGGCATGTGAATCTGGCACCAATATGCTTACATATGAAAACACATTTTTCTATGGAATTTACCCAGCTGAAGATTCAGTTACCAACAGTAGTATTCAGCAATGTGAACAGTTGTGCCTGAATGACACACAATGTACAGTTGCAACCTTTTCCAATAATGGAAGTCCACAGTGCTCAATAAAGAAAACTGAGTATGTTGCTGGCTATGCAGATCCATCTATAACCTCAATATCTTTTGTTAAGAGATGTTCAGGTCCATTAGCTGTGAATCCTAGTCTTATTAATTCGCCTCCTCCTAAACAGCCTCCAAGACTATGTGTTCCTTGTCTGATAGGAGCAGCCTCTGCCACTTTTTTCTTCTTTGCTATCGTTCAGTTGGGAATTGGTTTCTATTTCTGCAGAAGAAGAAACACCACTAGGAATGAAGTTGCGTTAGCCTTTACATGCCCCAACTCAAATGGTTTGATTGTGTTTCCCTACCCAGAGATAAGGAGCCTCGCTGGGGATTTCAAGAACCAAATCGGGCCAAATATGTTCAAGGGCATGCTACGAAACAATCACTTGGTTGCAGTCAAAAACCTAAATGCAAGAATAGAAGAAAGGAAGTTCCGGAGTGCTGTTATGAAGATAGGGAGCATCCATCACAAGAACCTTGTGAAGCTGGAGGGCTATTGTTGTGAATTCAATCACAGATTCTTGGTGTACGAATATGTCAAGAATGGTTCTCTTGATAAGTTCTTGCGTGACTCACCTCTTTGCAGGAGGCTAACTTGGAGAAAGAGAATTGAGATATGCTCGAGTGTGGCAAAGGCCATTTGCTATTTGCACACTGAGTGTAGGGACTTTGTTAGCCATGGCAATCTGAAGTGTACAAATGTCATACTGGATGAAAACTTAGAGGCCAAGGTAACTGAATTTGGGTTTGCAAGAGTAAACGGTGAGGCATCATATTGCGGTTTTTCTGCTGAGAAAGATGTAGAGGATTTTGGCAAGTTGGTACTGACTTTGTTATCTGGGTGTCAAGACGGTGAGGATCTTTGTGAGTGGGCATATAAAGAATTGATGGAAGGTCGATCTAACAATGTGGTTGATAAAAGAATTGGTGATGGAATCGATTCAGAGGAGCTACAACGTGCATTAAGAATAGCATTCTGGTGCCTTCAAATGGATGAACATAGGAGGCCTTCAATGGGGGAGGTAGCAAGAGTACTAGATGGTACATTGAGTGTTGATCTACCACCACCTCCATTTGCTGTCCAGAGGCCGTTGATGGAAGATGATACTCAAAATTATGGTCCACAGTCAGAAGCATAG 2283 0.4196 MLELEACLIRPPFLLCIFIGFLLHLVFTAEIPLSSKLSVADNDCWVSTNGDFALGFSNISDQPNQYSIGIRFNSKSIPFSQQTVVWVAGAQVTVGNRSYFQLTPEGELVLFDSLQEVLVWTSETANQSVVSAAIHDNGNLVLLDKEEHVIWQSFDYPSDTLLPGQSLSVDHILRAASKKTTSSYYSLYMNASGQIQLRWESNIIYWTSDSPSIANLSAFLTSNGALQLRDQSSKPVWSVFSDDHNDSVNYRFLRLDLDGNLRIYSWIETLQSWRSVWQAVENQCKVFATCGQHGICVLTASGTADCRCPFDVAELNKCLVPYKEACESGTNMLTYENTFFYGIYPAEDSVTNSSIQQCEQLCLNDTQCTVATFSNNGSPQCSIKKTEYVAGYADPSITSISFVKRCSGPLAVNPSLINSPPPKQPPRLCVPCLIGAASATFFFFAIVQLGIGFYFCRRRNTTRNEVALAFTCPNSNGLIVFPYPEIRSLAGDFKNQIGPNMFKGMLRNNHLVAVKNLNARIEERKFRSAVMKIGSIHHKNLVKLEGYCCEFNHRFLVYEYVKNGSLDKFLRDSPLCRRLTWRKRIEICSSVAKAICYLHTECRDFVSHGNLKCTNVILDENLEAKVTEFGFARVNGEASYCGFSAEKDVEDFGKLVLTLLSGCQDGEDLCEWAYKELMEGRSNNVVDKRIGDGIDSEELQRALRIAFWCLQMDEHRRPSMGEVARVLDGTLSVDLPPPPFAVQRPLMEDDTQNYGPQSEA 760
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2454 760 ProSiteProfiles Bulb-type lectin domain profile. 30 155 IPR001480 -
Dere01g2454 760 SMART blect_4 36 157 IPR001480 -
Dere01g2454 760 Gene3D - 157 273 IPR036426 -
Dere01g2454 760 ProSiteProfiles PAN/Apple domain profile. 326 406 IPR003609 -
Dere01g2454 760 ProSiteProfiles Bulb-type lectin domain profile. 158 276 IPR001480 -
Dere01g2454 760 MobiDBLite consensus disorder prediction 739 760 - -
Dere01g2454 760 Pfam PAN domain 334 399 IPR003609 -
Dere01g2454 760 Gene3D - 26 156 IPR036426 -
Dere01g2454 760 SUPERFAMILY alpha-D-mannose-specific plant lectins 80 208 IPR036426 -
Dere01g2454 760 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 27 156 - -
Dere01g2454 760 Pfam S-locus glycoprotein domain 241 308 IPR000858 GO:0048544
Dere01g2454 760 PANTHER OS07G0415500 PROTEIN 15 740 - -
Dere01g2454 760 Gene3D Transferase(Phosphotransferase) domain 1 561 734 - -
Dere01g2454 760 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 457 560 - -
Dere01g2454 760 Pfam D-mannose binding lectin 83 173 IPR001480 -
Dere01g2454 760 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 640 735 - -
Dere01g2454 760 ProSiteProfiles Protein kinase domain profile. 443 731 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2454 760 PIRSF SRK 4 645 IPR024171 GO:0004674
Dere01g2454 760 PIRSF SRK 637 759 IPR024171 GO:0004674
Dere01g2454 760 Gene3D Phosphorylase Kinase; domain 1 457 560 - -
Dere01g2454 760 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 561 639 - -
Dere01g2454 760 CDD B_lectin 46 157 IPR001480 -
Dere01g2454 760 Gene3D Hepatocyte Growth Factor 333 407 - -
Dere01g2454 760 SMART ntp_6 327 405 IPR003609 -
Dere01g2454 760 SUPERFAMILY Protein kinase-like (PK-like) 501 727 IPR011009 -
Dere01g2454 760 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 157 275 - -
Dere01g2454 760 Pfam Protein tyrosine and serine/threonine kinase 508 640 IPR001245 GO:0004672|GO:0006468
Dere01g2454 760 SUPERFAMILY alpha-D-mannose-specific plant lectins 177 275 IPR036426 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2454 Dere-ChrDere01 39084116 39086398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2454 483 745 Receptor kinase-like Gene Family AT4G23150 32.673 6.32e-39 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_SD-2b Dere01g2454 PK_Tyr_Ser-Thr 5.5e-21 CL0016