Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2452 ATGCAACAGAAATTGCACTCTGCAAACCAATCTGAATCAGATATGCGCAGCAATAAACTATATACGAGCTGTTCTGAAGCTTGGTGGCACAACATAGGGCACGATGCCTTCTCTAAAAATATAGCAGGTGAAGCCAAAATGAATTCCTTTGTGCCACAATATTTGGATGGTAGTTTTGGGAACCACACCAGTAATTCACAACCTAAGACTGTGCTGGCTGAAGGGAAGGAGGCTACAAAAGAGAAAGGTGGAGAAATGTATGAAGAACCTCAACAAAAGCAATTTGCTGTCCCTAGTATGCCTTCAACAGTAAATGAATTTCTTGCGCCACCTACACAGATGGAGCTTGTTGGCCACTCAATAGCATGTGCATCTTACCCTTATTCAGATCCACATTATGGGGGAGCAATCCCGACCTATGGACATCAACCTTTGGTACATTCTCATAGTTTTGGAGGGCACTCTTCTAGACTGGTGTTACCACTGGAAATGGAAGAGGAACCTGTATATGTTAATGCCAAGCAATACCATGGAATTTTGAGGCGTAGGCAATCACGTGCCAAGGCTGAGCTGGAAAAAAAGCTGATAAAAGTGAGGAAGCCTTATCTTCATGAATCTCGGCATTTGCATGCCATAAGAAGAGCAAGAGGGTGTGGAGGCCGTTTTCTGACAACAAAGAAACCTGATAATACTGCTGCAAACACAGCAACCAACAACAAGAATACTGTTAGCACTGACCACAAAGCTGTATCTCCCAACTTATCTGCCATTGCTGATTCAACTTCTGGTTCCCCACAAATCATGAATCCCCGCCAACCTGACATGCATTGCAGTTCCATTGGTAACGAGCACTACTCACACTTTCAGGGATTTGAGCTGTCTGGCTATCAACCTCGCTCAGGCGACAGAGGAAACCAAGGAGACTTCTCTGGGGTTCGCAGGGCGCTGACCATAAAATAA 960 0.4469 MQQKLHSANQSESDMRSNKLYTSCSEAWWHNIGHDAFSKNIAGEAKMNSFVPQYLDGSFGNHTSNSQPKTVLAEGKEATKEKGGEMYEEPQQKQFAVPSMPSTVNEFLAPPTQMELVGHSIACASYPYSDPHYGGAIPTYGHQPLVHSHSFGGHSSRLVLPLEMEEEPVYVNAKQYHGILRRRQSRAKAELEKKLIKVRKPYLHESRHLHAIRRARGCGGRFLTTKKPDNTAANTATNNKNTVSTDHKAVSPNLSAIADSTSGSPQIMNPRQPDMHCSSIGNEHYSHFQGFELSGYQPRSGDRGNQGDFSGVRRALTIK 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2452 319 ProSiteProfiles NF-YA/HAP2 family profile. 165 225 IPR001289 GO:0003700|GO:0006355
Dere01g2452 319 MobiDBLite consensus disorder prediction 220 241 - -
Dere01g2452 319 MobiDBLite consensus disorder prediction 294 319 - -
Dere01g2452 319 PRINTS CCAAT-binding transcription factor subunit B signature 199 222 IPR001289 GO:0003700|GO:0006355
Dere01g2452 319 PRINTS CCAAT-binding transcription factor subunit B signature 168 190 IPR001289 GO:0003700|GO:0006355
Dere01g2452 319 SMART cbf3 164 225 IPR001289 GO:0003700|GO:0006355
Dere01g2452 319 ProSitePatterns NF-YA/HAP2 subunit signature. 170 190 IPR018362 GO:0003677|GO:0016602
Dere01g2452 319 Gene3D - 165 226 - -
Dere01g2452 319 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 60 287 IPR001289 GO:0003700|GO:0006355
Dere01g2452 319 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 167 222 IPR001289 GO:0003700|GO:0006355
Dere01g2452 319 MobiDBLite consensus disorder prediction 227 241 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2452 Dere-ChrDere01 39054508 39058213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2452 107 222 CCAAT-HAP2 Transcription Factor Family AT5G12840 62.931 6.69e-45 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Dere01g2452 CBFB_NFYA 5.4e-26 No_clan