Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2448 ATGTTCATGCAGTCGCTTCGGAAGTTCCAATCCTCAACAATTGCAGCCTCATTTCTCAAATCCGCTCTCTCCCTCTCTGGACTTTTTTTTTTTCTGCAGGAGAGTGAGAGAGATATGGAAATGGCACTCAATATGCACAGTGTTTCCTTCTCATTCTCTATGGCTAATCCTGCCAGCCTTCGGAGGACCTCTTCCCCTCCGCAGTTTGCTAACCAACTAGTTCGCCTTCCTTTTTCTTCCTCAACACCCACCAAATTGCCTCTGCAACTTGTTTCCAGGAACTCTACTTATAGGCCAATTAAATGCTCCGTTTCTGAAGCTACAGAACCCAAAACTGAGAAGAATAAACAGTTGATGAGAAGAAGAGACATAAGAAACATAGCAATTGTAGCTCATGTTGATCATGGAAAAACAACTTTAGTTGATGCGATGCTCAAACAAACAAAGGTATTTCGCGACAATCAATTTGTACAGGAAAGAATAATGGACTCGAATGATTTGGAGCGTGAAAGAGGAATCACAATATTAAGTAAAAATACATCTGTCACCTATAAGGATACCAAGATTAATATAATAGATACACCAGGTCACTCTGACTTCGGAGGTGAAGTGGAGCGGATCCTGAATATGGTGGAAGGAATCCTCTTAGTGGTAGACTCTGTTGAAGGCCCAATGCCACAGACAAGATTTGTTTTAAAGAAGGCTCTAGAGTTTGGGCATGCAGTTGTTGTTGTTGTCAATAAAATTGATAGACCTTCTGCTCGTCCCGACTTTGTTATCAATTCCACTTTTGAACTCTTTCTTGAACTAAATGCAACAGATGAACAGTGTGACTTCCAGGTGATATATGCTAGTGGCATAAAGGGACAGGCAGGACTGTCTCCTGAAAATTTGGCAGAAGATCTTGGTCCATTGTTTGAAGCCATAATCAGATGTATCCCTGGACCACATATTGACAAAGATGGTGCACTGCAAATGCTTGCTACAAATATTGAGTATGATGAGCATAAAGGGCGTATAGCAATTGGGCGTTTGCAAGCTGGAGTTTTACAAAGGGGCATGGATGTCAAGGTATGTACTACTGAAGATTCATGTAGATACGGGAGAATTAGTGAGCTTTTTGTGTATGAAAAATTCAGTAGGGTCCCTGCAGAAAGTGTGGAGGCTGGTGATATATGTGCTGTTTGTGGAATTGCTGATATACAGATTGGGGAAACTATTGCTGACAAAGTATCCGGGAAGCCACTGCCATCCATCAAGGTGGAAGAACCAACAGTGAAAATGTCTTTCTCCATAAACACTTCATCGTTTGTTGGTCGGGAGGGAAAGTATGTTACTAGTAGGAATTTAAGGGATAGGCTCTATCGTGAACTTGAGCGAAATTTGGCCATGAGAGTTGAAGATGGTGAAACAGCAGATACGTTTATTGTCAGTGGCCGTGGTACATTGCATATAACCATACTCATAGAAAATATGCGAAGAGAAGGATATGAATTCATGGTAGGGCCTCCCAAAGTTATCAACAAGAAAGTAAATGACCAACTGCTAGAACCGTATGAGATTGCCACTGTGGAGGTACCGGAGGAACACATGGGGGCTGTTGTTGAACTCCTGGGCAAGAGACGAGGGCAAATGTTTGATATGGAAGGAGTTGGATCGGAAGGAACTACCATACTCAAATATAAGATCCCAACCCGTGGCCTTCTTGGATTGCGGAATTCCATTTTAACAGCTTCCCGAGGAACAGCAATTCTCAACACTATTTTTGATAGCTATGGACCTTGGGCTGGAGACATCAGTACTCGGGATCAAGGTTCACTGGTTGCTTTTGAGGATGGAACAAGTACATCTTATGCACTTGCTAGTTCACAGGAGAGAGGACAGATGTTTATTGGTCCTGGAGTGGATGTTTACAAAGGTCAAATTGTTGGGATCCATCAGCGACCTGGGGATTTGGCCTTAAATGTTTGCAAGAAAAAAGCTGCAACAAACGTACGTTCCAACAAGGAACAAACAGTGGTTCTTGATACACCGTTGGATTATAGTCTGGATGACTGCATCGAATACATCCAAGAAGATGAGCTAGTAGAGGTCACTCCCCAAAGTATTCGAATGTGCAAGAATGCTAAACTTGCAAAGAAAACGAGGTAG 2151 0.4245 MFMQSLRKFQSSTIAASFLKSALSLSGLFFFLQESERDMEMALNMHSVSFSFSMANPASLRRTSSPPQFANQLVRLPFSSSTPTKLPLQLVSRNSTYRPIKCSVSEATEPKTEKNKQLMRRRDIRNIAIVAHVDHGKTTLVDAMLKQTKVFRDNQFVQERIMDSNDLERERGITILSKNTSVTYKDTKINIIDTPGHSDFGGEVERILNMVEGILLVVDSVEGPMPQTRFVLKKALEFGHAVVVVVNKIDRPSARPDFVINSTFELFLELNATDEQCDFQVIYASGIKGQAGLSPENLAEDLGPLFEAIIRCIPGPHIDKDGALQMLATNIEYDEHKGRIAIGRLQAGVLQRGMDVKVCTTEDSCRYGRISELFVYEKFSRVPAESVEAGDICAVCGIADIQIGETIADKVSGKPLPSIKVEEPTVKMSFSINTSSFVGREGKYVTSRNLRDRLYRELERNLAMRVEDGETADTFIVSGRGTLHITILIENMRREGYEFMVGPPKVINKKVNDQLLEPYEIATVEVPEEHMGAVVELLGKRRGQMFDMEGVGSEGTTILKYKIPTRGLLGLRNSILTASRGTAILNTIFDSYGPWAGDISTRDQGSLVAFEDGTSTSYALASSQERGQMFIGPGVDVYKGQIVGIHQRPGDLALNVCKKKAATNVRSNKEQTVVLDTPLDYSLDDCIEYIQEDELVEVTPQSIRMCKNAKLAKKTR 716
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2448 716 SUPERFAMILY EF-G C-terminal domain-like 517 632 IPR035647 -
Dere01g2448 716 Pfam Elongation factor G C-terminus 514 600 IPR000640 -
Dere01g2448 716 Gene3D Elongation Factor G (Translational Gtpase), domain 3 425 708 - -
Dere01g2448 716 FunFam GTP-binding protein TypA 425 530 - -
Dere01g2448 716 SUPERFAMILY EF-G C-terminal domain-like 422 506 IPR035647 -
Dere01g2448 716 FunFam GTP-binding protein TypA 318 418 - -
Dere01g2448 716 CDD BipA_TypA_C 517 596 IPR035651 -
Dere01g2448 716 FunFam GTP-binding protein TypA 508 601 - -
Dere01g2448 716 NCBIfam translational GTPase TypA/BipA 124 713 IPR006298 GO:0003924|GO:0005525
Dere01g2448 716 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 122 317 IPR000795 GO:0003924|GO:0005525
Dere01g2448 716 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 596 711 - -
Dere01g2448 716 Pfam Elongation factor Tu domain 2 338 407 IPR004161 GO:0005525
Dere01g2448 716 SUPERFAMILY Translation proteins 270 417 IPR009000 -
Dere01g2448 716 Gene3D Translation factors 318 418 - -
Dere01g2448 716 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 113 325 IPR027417 -
Dere01g2448 716 NCBIfam small GTP-binding protein domain 124 257 IPR005225 GO:0005525
Dere01g2448 716 CDD TypA_BipA 123 316 IPR047041 -
Dere01g2448 716 FunFam GTP-binding protein TypA 120 317 - -
Dere01g2448 716 Pfam Elongation factor Tu GTP binding domain 123 314 IPR000795 GO:0003924|GO:0005525
Dere01g2448 716 CDD BipA_TypA_II 324 417 IPR047042 -
Dere01g2448 716 CDD BipA_III 424 502 IPR047043 -
Dere01g2448 716 Gene3D bipa protein 602 709 IPR042116 -
Dere01g2448 716 Gene3D - 508 601 - -
Dere01g2448 716 FunFam GTP-binding protein TypA 602 688 - -
Dere01g2448 716 PRINTS GTP-binding elongation factor signature 126 139 IPR000795 GO:0003924|GO:0005525
Dere01g2448 716 PRINTS GTP-binding elongation factor signature 170 178 IPR000795 GO:0003924|GO:0005525
Dere01g2448 716 PRINTS GTP-binding elongation factor signature 242 251 IPR000795 GO:0003924|GO:0005525
Dere01g2448 716 PRINTS GTP-binding elongation factor signature 190 200 IPR000795 GO:0003924|GO:0005525
Dere01g2448 716 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 163 178 IPR031157 -
Dere01g2448 716 Gene3D - 121 317 IPR027417 -
Dere01g2448 716 SMART EFG_C_a 514 603 IPR000640 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2448 Dere-ChrDere01 39025143 39033327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2448 122 251 Eukaryotic Initiation Factors Gene Family AT3G22980 43.939 3.13e-24 107