Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2441 ATGGATTTTTCCCCAGTTTCGAATACATATTTTGCAGCTGATTTTGATTCTTTCATGGGAACTCCCGAATTCCCAGATCTCGGAAAGCATTGTGCTGTTGATGATTGCAAGCTGATTGATTTCTTGCCCTTCACATGCGATCGTTGCAATCAGGTATACTGTTTGGAGCACAGAAGTTATATTAAACATCAATGTCAGAAAGCTGACAGTCTAGACGTCACTGTTGTCATATGTCCTCTTTGTGCAAAAGGAGTTCGCCTAATTCCTGATGAAGATCCAAACATAACTTGGGAGAATCATGTCAACACTGAATGTGACCCGTCAAATTATGAGAGAGCCGTGAAGAAGAAAAAATGCCCTGCCCCTGGATGTAGAGATATCTTAGTGTTCTCAAACACAATCAAATGTAGGGATTGCTTGGTAGATCATTGTTTGAAGCATCGGTTTGGCCCTGATCACAAGTGTCCTGGACCCAAAAGTCTGGACACAAGTTTTTCATTTATGAGTCTATTAAGCAGGAGTCGAAAAGAGGAGTCAAAGCCAAATTCATCGTCACCTACATCTTCATCAAAATGGGCTTCGAGCTTTCGTAATGTGGCTTCAAACATTCGAGCTTCAGCTGAAGCCAGCATGTCAAAATTGGGTAATGAAATTAACCAAGCTTGGCACACAGCAAAGGATGGGATGGGACAGACCAGTGGCAGTGGTAACAGAAATGGGCAAGCGGAGGTGGAGCAATGCCCTCAGTGCGGTGCAAAGTTTTCCTCAGTCACTGCTTTGGTGGATCATGTGCAGAAAGTTCACGAAAGGAGCAGCAACCGATCCAGGGGGCTGGCGAAGGTGACAATAGATGTCTGTCCCAAGTGTAGTAGAGGATTTCGAGATGCAGTGTCCCTTGTGGAGCATGTTGAGAGGGATCACGGTGCTTGCAATTTGGACATGGCTGCCAAGTATATCATTCCTGCTGTACTAGGATCATTTGGAGTTGCATGGGTGTGTGATACTGTCGTTTCTGACTCAAAGATATTTGGAGGCACTACCCCCCATACAGTTTCAAGTAAGGAGTGGTATGATGAGACTGACAAAAAATTTCAGGCATGGCCTCGTACTGCTGGTCCACCGGTGGTCATGAACCCTATAAGTCGCCAAAATTTCGTTGTCAAGTCCCGTTCTGAATCTTGA 1182 0.4484 MDFSPVSNTYFAADFDSFMGTPEFPDLGKHCAVDDCKLIDFLPFTCDRCNQVYCLEHRSYIKHQCQKADSLDVTVVICPLCAKGVRLIPDEDPNITWENHVNTECDPSNYERAVKKKKCPAPGCRDILVFSNTIKCRDCLVDHCLKHRFGPDHKCPGPKSLDTSFSFMSLLSRSRKEESKPNSSSPTSSSKWASSFRNVASNIRASAEASMSKLGNEINQAWHTAKDGMGQTSGSGNRNGQAEVEQCPQCGAKFSSVTALVDHVQKVHERSSNRSRGLAKVTIDVCPKCSRGFRDAVSLVEHVERDHGACNLDMAAKYIIPAVLGSFGVAWVCDTVVSDSKIFGGTTPHTVSSKEWYDETDKKFQAWPRTAGPPVVMNPISRQNFVVKSRSES 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2441 393 ProSiteProfiles Zinc finger AN1-type profile. 113 163 IPR000058 GO:0008270
Dere01g2441 393 Gene3D - 98 167 IPR035896 -
Dere01g2441 393 MobiDBLite consensus disorder prediction 172 192 - -
Dere01g2441 393 Pfam C2H2-type zinc finger 246 268 - -
Dere01g2441 393 SUPERFAMILY AN1-like Zinc finger 17 68 IPR035896 -
Dere01g2441 393 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 23 274 - -
Dere01g2441 393 SMART AN1_Zf_4 119 160 IPR000058 GO:0008270
Dere01g2441 393 SMART AN1_Zf_4 31 70 IPR000058 GO:0008270
Dere01g2441 393 SUPERFAMILY AN1-like Zinc finger 76 159 IPR035896 -
Dere01g2441 393 ProSitePatterns Zinc finger C2H2 type domain signature. 286 307 IPR013087 -
Dere01g2441 393 SMART c2h2final6 245 268 IPR013087 -
Dere01g2441 393 SMART c2h2final6 284 307 IPR013087 -
Dere01g2441 393 ProSiteProfiles Zinc finger C2H2 type domain profile. 245 273 IPR013087 -
Dere01g2441 393 Pfam Protein of unknown function (DUF1138) 316 388 IPR009515 -
Dere01g2441 393 Pfam AN1-like Zinc finger 31 69 IPR000058 GO:0008270
Dere01g2441 393 Pfam AN1-like Zinc finger 119 158 IPR000058 GO:0008270
Dere01g2441 393 ProSitePatterns Zinc finger C2H2 type domain signature. 247 268 IPR013087 -
Dere01g2441 393 Gene3D - 19 76 IPR035896 -
Dere01g2441 393 Gene3D Classic Zinc Finger 215 311 - -
Dere01g2441 393 ProSiteProfiles Zinc finger AN1-type profile. 25 73 IPR000058 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2441 Dere-ChrDere01 38952080 38960288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2441 19 307 C2H2 Transcription Factor Family AT2G41835 64.505 1.95e-123 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g2441 DUF1138 3.5e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2441 01 38952080 38960288 Dere02g1423 02 13719665 13721703 CCT
Dere01g2441 01 38952080 38960288 Dere01g2441 01 38952080 38960288 ECH