Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2426 ATGTCTAAATATGACCATTTTGCTGATGATATCAGGCAGAAGGACAATTACTATAGCTTTTCGTTCGATAACATGGAGTTAGCATGTCTATATCATATCAATAATCAATCAGTTTTGGGCTTCGTTGGGTTAGGGTTTCATTCCATCATGGCTTCCTCTTCCTCTGATCCTGGCAAGTCGGAAGTTGGTGGTGGCGGTATCAGCTGCGGCAGCGGCAGTGCCGAGGCTTCGGAAGCAGTAATGGCCAATGATCAGCTCTTACTCTATAGGGGGTTGAAGAAAGCGAAGAAAGAAAGAGGGTGTACAGCAAAAGAGCGCATCAGCAAGATGCCTCCTTGTGCTGCAGGGAAACGCAGCTCCATTTACCGTGGTGTCACCAGGCATAGATGGACTGGTCGTTATGAGGCCCATCTTTGGGATAAAAGTACATGGAACCAGAATCAGAATAAAAAAGGAAAGCAAGGTGCATATGATGATGAGGAGGCTGCAGCAAGAGCATATGACCTTGCAGCTCTAAAATATTGGGGTCCAGGGACTCTAATTAATTTTCCAGTGACTGATTATACCAGAGATCTTGAAGAAATGCAAAATGTTTCAAGAGAGGAATACCTTGCATCTTTACGGCGGAAGAGCAGCGGTTTTTCAAGAGGAATCTCTAAATATCGTGGACTTTCCAGTCGATGGGAGCCATCATATGGTCGTATGGCTGGATCTGATTACTTCAATAGTATACATTATGGTATGGGTGATGATTCAGTAGCAGAAAGCGAATATGTGAGTGGATTCTGCAGAGAAAGAAAGATTGATTTTACAGATTACATCAAGTGGTGGAGATCCAATAAAAGTCGCCTACCTGATAGTGGAACAAAATCATCGGAAGAAAAAAAACATGGATTTGCTGGAGATATTTGTAGTGAGCTTAAAACATTGGAACAGGAACTCCAACCCACTGAACCGTACCAGATGCCACAGTTAGGCCTGCCCCATGAAAGGAAAAAGCATAAAAGTTCTGCAGTCTCTGCCTTGAGTATCTTATCACGGTCAGCAGCCTACAAGGGCCTGCAAGAGAAGGCGTCAAAGAGACAAGAAAATTACACTGATAATGATGAGGATGAAAACAAAAATACCATCAATAAGCTGGACCACGGCAAGGCAGTTGAGAAATCATCAAATCATGATGGTGATGATGAAAGACTTGACATTGCAATGGGAATGAGCGGGGCATTGTCTATTCAAAGAAATGTTTACCCATTGACTTCATTCTTATCTGCACCGCTTTTGACAGCCTATAATACTGTTGATCCATTGGTAGATCCTGTTCTCTGGACATCTCTTGTTCCTATACTTCCTGCTGGCATTTCTCGTACAGCTGAGGTTACTAAGACTGAGACTAGTTCAACTTACACCCTGTTTCGGCCAGAGGAGTGA 1428 0.4328 MSKYDHFADDIRQKDNYYSFSFDNMELACLYHINNQSVLGFVGLGFHSIMASSSSDPGKSEVGGGGISCGSGSAEASEAVMANDQLLLYRGLKKAKKERGCTAKERISKMPPCAAGKRSSIYRGVTRHRWTGRYEAHLWDKSTWNQNQNKKGKQGAYDDEEAAARAYDLAALKYWGPGTLINFPVTDYTRDLEEMQNVSREEYLASLRRKSSGFSRGISKYRGLSSRWEPSYGRMAGSDYFNSIHYGMGDDSVAESEYVSGFCRERKIDFTDYIKWWRSNKSRLPDSGTKSSEEKKHGFAGDICSELKTLEQELQPTEPYQMPQLGLPHERKKHKSSAVSALSILSRSAAYKGLQEKASKRQENYTDNDEDENKNTINKLDHGKAVEKSSNHDGDDERLDIAMGMSGALSIQRNVYPLTSFLSAPLLTAYNTVDPLVDPVLWTSLVPILPAGISRTAEVTKTETSSTYTLFRPEE 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2426 475 Gene3D AP2/ERF domain 121 186 IPR036955 GO:0003700|GO:0006355
Dere01g2426 475 MobiDBLite consensus disorder prediction 355 397 - -
Dere01g2426 475 Pfam AP2 domain 121 176 IPR001471 GO:0003700|GO:0006355
Dere01g2426 475 SMART rav1_2 121 190 IPR001471 GO:0003700|GO:0006355
Dere01g2426 475 PRINTS Ethylene responsive element binding protein signature 166 186 IPR001471 GO:0003700|GO:0006355
Dere01g2426 475 PRINTS Ethylene responsive element binding protein signature 122 133 IPR001471 GO:0003700|GO:0006355
Dere01g2426 475 ProSiteProfiles AP2/ERF domain profile. 121 184 IPR001471 GO:0003700|GO:0006355
Dere01g2426 475 FunFam AP2-like ethylene-responsive transcription factor 120 186 - -
Dere01g2426 475 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 75 292 - -
Dere01g2426 475 SUPERFAMILY DNA-binding domain 120 185 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2426 Dere-ChrDere01 38726762 38732720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2426 80 473 AP2-EREBP Transcription Factor Family AT2G41710 64.303 4.14e-163 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g2426 AP2 2.5e-09 CL0081