Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2425 ATGGGAACTGCGAGGAGGCAGTTGAAGGCTATGCTTTGGAAGAATTGGCTTCTCAAAATTCGTCATCCATTCATAACAAGTGCTGAGATTTTGCTCCCTACTTTAGTGATGTTGCTGTTAATAGCTGTAAGGACTCGGGTTGATACACAAATTCATCCAGCTCAACCGCACATTCGGGAAGGGATGTATGTGGAAGTGGGCAGAGGTATTTCCCCTAGCTTCCAACAAGTTTTGGAACTTTTGTTTGCCAAGGGAGAGTATTTAGCTTTTACCCCTGACACAAAAGAGACTGAGCAGATGATAGACATCATGTCAATAAAATTTCCCCTCTTGAAGCTTGTCAGTAGAATTTACAAAGACGAGGCAGAGCTGGAAACTTACATACGCTCAGATGTTTATGGTACCTGCAATCAAGCAAGGAATTGTTCAAATCCCAAAATCAAAGGAGCAGTTGTATTTCATGAACAAGGTCCTCAGTCATTTGATTATAGCATACGCCTCAATCATACTTGGGCTTTCTCTGGTTTTCCTGATGTTAAAACCATAATGGATACAAACGGCCCCTTTCTCAATGACTTGGAACTTGGTGTTAGTGCAGTACCAACGATGCAATACAGCTTCAGCGGGTTTTTGACTCTCCAGCAAGTGGTTGATTCATTCATAATATTCATCACTCAGCAGTCTGACATGAATTCCAGCTTTGAAAGTGTAGAGTATTCTCTGCCACACTACAATGATTCTAATTTTTCTTTGAACTTTCCTTGGACTCAATTTAGCCCTGCTCACATACGCATGGCTCCATTTCCCACTCGAGATTACACTGATGACCAGTTCCAGTCAATCGTGAAGAAATTCATGGGAATATTGTACTTGTTGGGATTTCTCTATCCAATTTCTCGACTGATCAGTTATTCTGTGTTTGAGAAGGAACAGAAAATTAAGGAAGGACTCTACATGATGGGCCTGAAAGATGGTGTGTTCCATCTCTCTTGGTTTGTGACATATGCTTTACAGTTTGCAATTTCTTCTGGGATCATCACAGCTTGCACCATGGATAATTTATTCAAGTATAGTGACAAGACACTGGTGTTTGCATACTTCTTCCTTTTTGGGCTTAGTGCAATCATGCTGTCATTTTTGATATCAACTTTTTTCAACCGGGCCAAAACAGCTGTAGCAGTTGGAACCCTTTCTTTTCTTGGTGCCTTTTTACCTTATTACACTGTATATGATGAGGCAGTCTCTATCGTCTTGAAAATTGTGGCTTCTTTGCTTTCACCTACGGCTTTTTCTCTGGGCTCTGTCAACTTTGCTGATTACGAGCGTGCTCATGTTGGACTTCGTTGGAGCAACATATGGCGGGAATCATCTGGAGTGAATTTTTTGTTCTGTCTTCTGATGATGCTGCTTGATACACTTCTGTATTGTGCAATTGGTCTTTATCTTGATAAGGTTCTACCAAGGGAGTATGGATTACAATATTCATGGAGCTTTATTTTCCAAAAAGGCTTTTGGAGGAAGAAAAAAGTTGCTGAAAATTGTTCCTCCAGTTCAAGTATAAAAATTTCTGATGAGATGTACAAGTCAAAAGGAAATTTTCCAGGGGCGAATACCTTCAAACCTGCTACAGAAGCAATAAGCTTGGACATGAAACAACTGGAGCTTGATGGCAGGTGCATTCAAATTAGGAATTTGCATAAGGTTTATGCTTCTAAAAAGGGGGGTTGCTGTGCAGTTAACTCATTACAGCTTACATTGTACGAAAATCAAATTCTTGCTCTTCTAGGGCACAATGGAGCTGGAAAAAGCACGACAATCTCAATGCTTGTTGGTCTTCTTCCTCCTACTTCAGGGGATGCTTTGGTGTTTGGACAGAATATTTTAACTGATATTGATGAGATACGGAAGGTTTTGGGTGTCTGCCCCCAAAATGATATACTCTTTCCAGAATTGACTGTGAGAGAGCATCTTGAAATATTTGCCATATTAAAGGGTGTGGAGGAAGACTCTTTAAATGATGTTGTTACTAATATGGTTGATGAGGTGGGTTTAGCTGATAAAATCAACACTGTTGTGAGATCTCTTTCTGGTGGCATGAAGAGGAAACTGTCTCTTGGAATTGCATTGATAGGAAACAGTAAGGTTATAGTTCTTGATGAACCTACCAGTGGAATGGACCCATACTCAATGCGCTTGACGTGGCAGTTAATTAAAAAGATTAAGAAGGGAAGGATAATATTACTGACAACTCACTCTATGGATGAAGCAGATGAACTAGGTGATCGGATAGCTATCATGGCCAATGGTTCTCTGAAATGCTGTGGAAGTTCCCTTTTCTTGAAGCATCACTATGGTGTTGGGTATACTTTAACTCTTGTGAAGTCAGCACCTACTGCATCAGTAGCTTCTGATATTGTACGACGCCATATTCCATCAGCTACTTGTGTGAGCGAGGTGGGAACTGAGATTTCCTTTAGGCTTCCTCTGCTATCCTCATGTGCTTTTGAGAGTATGTTCAGGGAAATTGAAAGTTGCTTGGGAAAATCAATTTTTAACTTAGAATCCACTAATAGTGGTAAAAAAGATGATCTTGGTATTGAAAGCTATGGTATATCTGTCACAACGCTGGAGGAGGTATTCCTGCGAGTTGCAGGATGTGACTATGATGAAGTTGAATGCTTTGAGGAGAATGACTGTCCCCTTATATCAGACCCTTTGCCTTCTCATGCCTCTTATAATCGTCCATCTGCCAAAAGATTTCACTTTGAATGTTTTGGAAATTACAGGAAGATTCTTGGATTCATATCTAGCACAGTGGCAAGAGCTTGTAATTTATTTTTTGCTACAGTGACAAGTCTCATAAACCTATTGGGTATGCTGTGTTGTAGCTGTTGTGTCATTACCAGGTCAACATTTTGGCAACATTTTAAAGCTTTATTCATTAAGAGAGCAATATCTGCTCGCAGAGATCACAAGACTATTGTTTTCCAGCTTCTGATTCCTGCTGTCTTCTTGTTTATTGGTCTTCTATTTCTCAAGCTCAAGCCACATCCTGATCAACAGTCACTGACCCTTACAACATCTTATTTTAATCCTTTGTTGAGTGGAGGTGGTGGGGGAGGTCCTATTCCTTTTAATCTCACTTTTCCAATTGCTGAAGAGGTAGCTCATTATGTCAAAGGTGGGTGCATTCAAAAGGTCAAACCAACTGCATACAAATTTCCTAATCCAGAAAAGGCATTAGCTGATGCAGTCAAAGTGGCAGGACCAACTCTTGGACCTACTTTAATTTCGATGAGTGAATATTTGATGTCTAGCTTTAATGAGTCCTACCAGTCTAGGTATGGAGCAATTTTAATGGATGAGCAGTATGATGATGGAAGCTTAGGCTACACTGTTTTACATAACTGTTCTTGTCAGCATTCTGGTCCCACCTTTATCAATTTGATGAATGCTGCAATTCTTAGGCTTGCTACTCGTAACAGAAATATGACAATTCGGACTCATAACCACCCTCTACCAATGACGCAAAGCCAGCACTTACAACATCATGATCTAGACGCCTTCTCTGCTGCAATTATTGTCAATATTGCCTTCTCTTTTATACCAGCCTCATTTGCTGTTTCCATTGTAAAGGAACGCGAAGTTAAGGCTAAACATCAACAACTAATCAGCGGGGTTTCTATTTTTTCATATTGGGCTTCTACATTTATTTGGGATTTTGTGAGCTTCTTGTTTCCTACCACCTTTGCAGTTGTTCTCTTTTACATCTTTGGTTTGGATCAGTTTGTTGGAGGGCCTTCTTTACTACCAACAATCCTCATGTTTTTGGAGTATGGACTTGCAATTGCATCGTCAACATATTGCCTTACATTTTTCTTTTCTGACCATACCATGGCTCAGAATGTGGTTCTCCTGGTCCACTTCTTCACTGGACTAATACTAATGGTTATTTCGTTCATAATGGGAGTGATACCATCAACAACAAGTGCCAATTCTTTTCTCAAGAACTTCTTCAGAATATCTCCTGGATTTTGTTTTGCTGATGGACTTGCTTCACTAGCCCTTCTCCGGCAAGGGATGAAGGATAAAACAAGTGACCAGGTGTTTGATTGGAATGTTAGCGGTGGCTCGCTTTGTTATCTTGCTGTTGAGAGCTTTAGTTACTTTCTGTTAACACTTGGGATTGAAGTTTTTCCTTCTCTCAAATTGACTCCATTCATGATTAGAAAGTGGTGGGAAAGTATAATCCCACGGAATACTCCTTCTTATCTGGAAAATCTATTAGAATCCTCCTCAGAAACTGTTGGTATGGATTTTGACGAAGATGTAGATGTCAAAACAGAAAGAAATAGAGTTCTTTCAGGTTCCCTTGACAATTCCATCATCTACTTGCGTAATCTTCGTAAGGTATATTCTGAAGGGAAGCTTCATGGGCAGAAGATTGCAGTAGATTCATTAACCTTCTCGGTTCAGGAAGGAGAATGTTTCGGCTTTTTGGGGACTAATGGAGCTGGAAAGACCACAACTTTGTCTATGCTGTGTGGGGAAGAATCTCCTTCAGATGGAACTGCTTTTATTTTTGGCAAAGATATATGCTCCCATCCCAAAGCTGCTCGTCGACATATTGGTTATTGTCCACAATTTGATGCTCTATTGGAATATTTGACTGTAAAAGAGCATCTCGAGCTTTATGCTAGAATAAAAGGTGTTCCAAGTTACATGATAGATCATGTTGTTATGGAAAAGTTACAGGAGTTTGATTTGTTGAAGCATGCTACTAAGCCATCGTATTCTCTCAGTGGAGGAAATAAGAGGAAATTGTCTGTTGCAATTGCAATGATTGGAGATCCTCCTATAGTCATTCTTGATGAGCCATCCACAGGTATGGATCCCATTGCCAAACGATTCATGTGGGATGTCATATCTAGGATCTCAACTAGACGAGGAAAGACAGCAGTAATTCTTACTACTCACAGCATGAACGAAGCTCAAGCTTTGTGCACCCGAATAGGGATAATGGTTGGTGGCCGATTAAGATGCATTGGGAGTCCTCAGCATCTGAAAACAAGATTTGGGAATCATCTGGAACTGGAGGTGAAACCCACTGAAGTGAGCTCTGTGGACTTAGAAAAACTTTGTAAATCTATACAGAAAAAACTTTTTGATGTTCCATCACATCCTAGAAGCTTACTTGATGACTTTGAAATTTGCATTGGAGGGGCTGACTCCATTTCATCAGAAGATGCCTCCATTGCAGAAATTTGCTTGTCACGGGAAATGATTGTCTTGATTGGATGCTGGCTTGGCAATGAAGAAAGAATAAAGACGCTTATCTCTCCGGTCTCTGATGGGGTTTTTAGTGAACAATTATCAGAGCAATTGTTTCGAGATGGTGGTATTCCATTGCCAGTATTTTCTGAGTGGTGGTTGTCCAAGGAAAAGTTTTCGGCAATTGATTCATTTATTCTATCTTCTTTTCCTGGAGCAAGATGGCAAGGGTGCAATGGTTTGAGCATCAGATACCAGTTACCATATGGTGAAGGGTTTTCTCTTGCGGATGTTTTTGGACTTCTTGAAGGAAACAGAAATAGACTGGGCATTGCCGAGTACAGTCTCAGCCAGTCGACTCTGGAGACCATATTTAACCATTTTGCAGCTAACTCATAA 5670 0.4032 MGTARRQLKAMLWKNWLLKIRHPFITSAEILLPTLVMLLLIAVRTRVDTQIHPAQPHIREGMYVEVGRGISPSFQQVLELLFAKGEYLAFTPDTKETEQMIDIMSIKFPLLKLVSRIYKDEAELETYIRSDVYGTCNQARNCSNPKIKGAVVFHEQGPQSFDYSIRLNHTWAFSGFPDVKTIMDTNGPFLNDLELGVSAVPTMQYSFSGFLTLQQVVDSFIIFITQQSDMNSSFESVEYSLPHYNDSNFSLNFPWTQFSPAHIRMAPFPTRDYTDDQFQSIVKKFMGILYLLGFLYPISRLISYSVFEKEQKIKEGLYMMGLKDGVFHLSWFVTYALQFAISSGIITACTMDNLFKYSDKTLVFAYFFLFGLSAIMLSFLISTFFNRAKTAVAVGTLSFLGAFLPYYTVYDEAVSIVLKIVASLLSPTAFSLGSVNFADYERAHVGLRWSNIWRESSGVNFLFCLLMMLLDTLLYCAIGLYLDKVLPREYGLQYSWSFIFQKGFWRKKKVAENCSSSSSIKISDEMYKSKGNFPGANTFKPATEAISLDMKQLELDGRCIQIRNLHKVYASKKGGCCAVNSLQLTLYENQILALLGHNGAGKSTTISMLVGLLPPTSGDALVFGQNILTDIDEIRKVLGVCPQNDILFPELTVREHLEIFAILKGVEEDSLNDVVTNMVDEVGLADKINTVVRSLSGGMKRKLSLGIALIGNSKVIVLDEPTSGMDPYSMRLTWQLIKKIKKGRIILLTTHSMDEADELGDRIAIMANGSLKCCGSSLFLKHHYGVGYTLTLVKSAPTASVASDIVRRHIPSATCVSEVGTEISFRLPLLSSCAFESMFREIESCLGKSIFNLESTNSGKKDDLGIESYGISVTTLEEVFLRVAGCDYDEVECFEENDCPLISDPLPSHASYNRPSAKRFHFECFGNYRKILGFISSTVARACNLFFATVTSLINLLGMLCCSCCVITRSTFWQHFKALFIKRAISARRDHKTIVFQLLIPAVFLFIGLLFLKLKPHPDQQSLTLTTSYFNPLLSGGGGGGPIPFNLTFPIAEEVAHYVKGGCIQKVKPTAYKFPNPEKALADAVKVAGPTLGPTLISMSEYLMSSFNESYQSRYGAILMDEQYDDGSLGYTVLHNCSCQHSGPTFINLMNAAILRLATRNRNMTIRTHNHPLPMTQSQHLQHHDLDAFSAAIIVNIAFSFIPASFAVSIVKEREVKAKHQQLISGVSIFSYWASTFIWDFVSFLFPTTFAVVLFYIFGLDQFVGGPSLLPTILMFLEYGLAIASSTYCLTFFFSDHTMAQNVVLLVHFFTGLILMVISFIMGVIPSTTSANSFLKNFFRISPGFCFADGLASLALLRQGMKDKTSDQVFDWNVSGGSLCYLAVESFSYFLLTLGIEVFPSLKLTPFMIRKWWESIIPRNTPSYLENLLESSSETVGMDFDEDVDVKTERNRVLSGSLDNSIIYLRNLRKVYSEGKLHGQKIAVDSLTFSVQEGECFGFLGTNGAGKTTTLSMLCGEESPSDGTAFIFGKDICSHPKAARRHIGYCPQFDALLEYLTVKEHLELYARIKGVPSYMIDHVVMEKLQEFDLLKHATKPSYSLSGGNKRKLSVAIAMIGDPPIVILDEPSTGMDPIAKRFMWDVISRISTRRGKTAVILTTHSMNEAQALCTRIGIMVGGRLRCIGSPQHLKTRFGNHLELEVKPTEVSSVDLEKLCKSIQKKLFDVPSHPRSLLDDFEICIGGADSISSEDASIAEICLSREMIVLIGCWLGNEERIKTLISPVSDGVFSEQLSEQLFRDGGIPLPVFSEWWLSKEKFSAIDSFILSSFPGARWQGCNGLSIRYQLPYGEGFSLADVFGLLEGNRNRLGIAEYSLSQSTLETIFNHFAANS 1889
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2425 1889 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 560 793 IPR003439 GO:0005524
Dere01g2425 1889 FunFam ATP-binding cassette sub-family A member 12 552 797 - -
Dere01g2425 1889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1462 1692 IPR027417 -
Dere01g2425 1889 ProSitePatterns ABC transporters family signature. 695 709 IPR017871 GO:0005524|GO:0016887
Dere01g2425 1889 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1463 1701 IPR003439 GO:0005524
Dere01g2425 1889 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 556 798 IPR027417 -
Dere01g2425 1889 CDD ABC_subfamily_A 1463 1689 - -
Dere01g2425 1889 PANTHER ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA 1094 1401 IPR026082 GO:0016020|GO:0055085|GO:0140359
Dere01g2425 1889 CDD ABC_subfamily_A 560 781 - -
Dere01g2425 1889 Pfam ABC-2 family transporter protein 166 479 IPR013525 GO:0016020|GO:0140359
Dere01g2425 1889 Pfam ABC-2 family transporter protein 992 1394 IPR013525 GO:0016020|GO:0140359
Dere01g2425 1889 Pfam ABC transporter 580 723 IPR003439 GO:0005524
Dere01g2425 1889 Gene3D - 1454 1705 IPR027417 -
Dere01g2425 1889 Gene3D - 549 796 IPR027417 -
Dere01g2425 1889 SMART AAA_5 1493 1680 IPR003593 GO:0016887
Dere01g2425 1889 SMART AAA_5 588 770 IPR003593 GO:0016887
Dere01g2425 1889 ProSitePatterns ABC transporters family signature. 1600 1614 IPR017871 GO:0005524|GO:0016887
Dere01g2425 1889 Pfam ABC transporter 1485 1627 IPR003439 GO:0005524
Dere01g2425 1889 FunFam ABC transporter A family member 1 1452 1706 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2425 Dere-ChrDere01 38683440 38718902 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2425 540 826 Calmodulin-binding Proteins AT2G36910 25.667 1.11e-16 84.7
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2425 01 38683440 38718902 Dere01g2425 01 38683440 38718902 ECH