Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2424 ATGGATCAGAGCGTGACTGTGAGGAAGAAAGGGACGTCGTTGGGACATGGAAGAAAGTCGACGCCGCCATTCTTGTTGAAGACGTACAACCTGGTGGAGGACCCGGCCACGGACGACGTCGTTTCGTGGAACGGAGATGGAACGGCGTTCGTGGTGTGGCAGCCGGCAGAGTTTGCTCGTGCTCACCTTCCAAAGCTCTTCAAGCACAGCAACTTTTCAAGCTTTGTTCGTCAGCTCAATACCTACGGTTTTCGTAAGGTGGCAAAAAATAGATGGGAGTTTTGCAACAGCAGGTTTAGAAGGGGAGAGAAAGAAATGCTATGTGAGATTGGACGAAGAAAAGCTTGGGCCAGCAAGCAACCACCATTAATCCAAGACTCTGATCATCAAGGCCAAAGGTCTTGTTCCTCAACCTCTTCTTCGTCTTGGGATTACAATTTGGTGGTGCAAGAAAACAAGCGACAAAATAGGGAGAATTGGGAGTTGAGCTCAGAGCTCGCAGCCATGAAGAGCAAGTGCCTGAAGTTGCTTGAGTTGGTGGCTAAACATGCAAAGAAAGAGAAGGAAGATGAGAGGCCCATGTTGTTTGGAGTCAGACTTAAAGTTGAGGCAGATCATGGAGATCAGAGGAAGAGAGGTGAGGATATTAGAGAAACTGAGAAACTGCGAGCATTTTGCCGTCCCACCCCCACCTTTGTAATTAAAAGAAGTCATGTTAGATGA 723 0.4799 MDQSVTVRKKGTSLGHGRKSTPPFLLKTYNLVEDPATDDVVSWNGDGTAFVVWQPAEFARAHLPKLFKHSNFSSFVRQLNTYGFRKVAKNRWEFCNSRFRRGEKEMLCEIGRRKAWASKQPPLIQDSDHQGQRSCSSTSSSSWDYNLVVQENKRQNRENWELSSELAAMKSKCLKLLELVAKHAKKEKEDERPMLFGVRLKVEADHGDQRKRGEDIRETEKLRAFCRPTPTFVIKRSHVR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2424 240 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 18 185 IPR027725 -
Dere01g2424 240 MobiDBLite consensus disorder prediction 123 140 - -
Dere01g2424 240 Pfam HSF-type DNA-binding 24 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2424 240 Gene3D - 16 114 IPR036388 -
Dere01g2424 240 SUPERFAMILY "Winged helix" DNA-binding domain 20 113 IPR036390 -
Dere01g2424 240 ProSitePatterns HSF-type DNA-binding domain signature. 63 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2424 240 PRINTS Heat shock factor (HSF) domain signature 62 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2424 240 PRINTS Heat shock factor (HSF) domain signature 75 87 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2424 240 PRINTS Heat shock factor (HSF) domain signature 24 47 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2424 240 SMART hsfneu3 20 113 IPR000232 GO:0003700|GO:0006355|GO:0043565
Dere01g2424 240 MobiDBLite consensus disorder prediction 119 140 - -
Dere01g2424 240 FunFam Heat stress transcription factor B-4 16 114 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2424 Dere-ChrDere01 38680334 38681162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2424 22 183 HSF AT2G41690 50.838 4.60e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Dere01g2424 HSF_DNA-bind 4.4e-31 CL0123