Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2421 ATGTCGTCGTGCAGTAAGAGTAGCCTGGTGTGGGAAGATCTGACGGTGTCGGTGCCATGTAGTGGAGTGAAGAAGAAGAAGCTGCTTCATGGAATCACTGCCTCTGCTGAAGCTGCTCGCCTCATGGCTCTCATGGGCCCTTCTGGCTCCGGCAAAACCACCCTTCTCAACTCTCTTGCCGGGAAACTTCATGCGAATGTTACTGTGACCGGCGACATTCTGATCAATGGGAGGAAGAGGAACTTCTATCAGAGAGAGATGTCTTATGTTGATCAAGAAGAGTATTTTTTGGGAACATTGACGGTGAGAGAAACCCTCACATACTCAGCAAGAATCAGGCTCATTTCAAAAATGACCAAAGAAGAGATAAGTAAGGTGGTCGAACACACCATAATGGAAATGGGTCTTCAAGAATGTGCCGATAATCATATTGGGAATTGGCATTTGCGTGGAATCAGTACTGGTGAAAAGAAGAGACTGAGCATTGGCCTTGAGATCTTGACTCAACCTCGTGTGTTATTTCTCGATGAACCCACCAGTGGACTCGATAGTGCCTCCGCTTTCTACGTAATCCAAGCCGTAAGCCACATAGCTCGTGGTGGAAAAATAGTTATCTGTTCGATTCACCAGCCGAGTAGTGAAATTTTTCATCTGTTTGATGATCTGCTCTTGCTCTCTGGTGGAGAAACTGTTTATTTCGGCGAAGCAAAGATGGCTTTAGAGTTTTTTGCTAATGCAGGCTTCCCCTGTCCTACAAGAAGGAATCCTTCAGATCATTTCCTTCTATGTATTAATTTGGACTTCGAACTGATTTCAACATCATCAAATTCTGCAATGGACATGAAAACGTCAGAGATTAGAGCCATCCTCATTGAGTGTTACGGAAGTTCAGAGATAATGGCCAATACAAGAAGAATGATTCAAACATTAACATCTAATTTGCAGGAAGAACAAGTAATTGAGTCCAACACAAGAAGAAGCACTATCAACTGGTGGAAGCAACTCTGTACATTGACCCAGCGATCTTTCCTAAACATGACAAGGGACATGGGCTATTACTGGCTGAGGATCATATTTTACGTACTGGTATCGATCAGTGTTGGGACCCTATTTTATCATATTGGTACCGAGAACAACTCAATCTTGGCTAGAGGAAAGTGTGTATCATTCATCTATGGCTTTATGATTTGTTTATCTTGTGGAGGATTACCATTTTTCATTGAAGAATTGAAGGTGTTCTACGGTGAAAGGTCCAAAGGGCATTATGGAGAGGCTGTATTTGTACTGTCAAACATCCTGTCATCGTTCCCTTTCCTAGCTTTTATATCCCTGTTATCTGGAACGATCATATACTACATGGTGCAGTTTCATCCGGGTTTAAGTCATGGCGTATTTTTCTGCATCAACTTGTTCTGCTGCCTATCAGTTGTTGAGAGCTGCATCATGGTTGTTGCTTCAGTGGTTCCCAATGTCCTAATGGGCATAGGAATAGGAACTGGTGTTATAATCTTTATGATGATGTCTTCCCAAATCTTCCGTCCGCTACCTGACATTCCCAAGTTCTTTTGGCGCTACCCTATGTCCTACCTCAGTTTTGCTACTTGGGCAGTACAGGGACAATACAAGAATGACATGTTGGGGCTTGAGTTTGATCCTCTGCTACCTGGTGACTCAAGAGTCAAGGGAGAGCAAATCCTGAAATTGGTATTTGGGGTTCCATTGGATCATAACAAGTGGTGGGACTTAACAGCACTCATCGTCTTATTGTTACTTCACCGAATGCTCCTCGTCTTGGTACTTCGGTACATCAATAGATCCAAATTACCCTTGCTGTGGTTTCATGCAAAGGTAAGTCTACACCACTTTGCTGGGAGATTTTCATCAAGTAGCAAGCCATCTATCTCTTCCAAGAAACAACATGCTCCCCCTCCATTGTCTTCTCAAGAGGGTCTCATGTCTCCGAATTTTGCTAGTTGA 1977 0.4335 MSSCSKSSLVWEDLTVSVPCSGVKKKKLLHGITASAEAARLMALMGPSGSGKTTLLNSLAGKLHANVTVTGDILINGRKRNFYQREMSYVDQEEYFLGTLTVRETLTYSARIRLISKMTKEEISKVVEHTIMEMGLQECADNHIGNWHLRGISTGEKKRLSIGLEILTQPRVLFLDEPTSGLDSASAFYVIQAVSHIARGGKIVICSIHQPSSEIFHLFDDLLLLSGGETVYFGEAKMALEFFANAGFPCPTRRNPSDHFLLCINLDFELISTSSNSAMDMKTSEIRAILIECYGSSEIMANTRRMIQTLTSNLQEEQVIESNTRRSTINWWKQLCTLTQRSFLNMTRDMGYYWLRIIFYVLVSISVGTLFYHIGTENNSILARGKCVSFIYGFMICLSCGGLPFFIEELKVFYGERSKGHYGEAVFVLSNILSSFPFLAFISLLSGTIIYYMVQFHPGLSHGVFFCINLFCCLSVVESCIMVVASVVPNVLMGIGIGTGVIIFMMMSSQIFRPLPDIPKFFWRYPMSYLSFATWAVQGQYKNDMLGLEFDPLLPGDSRVKGEQILKLVFGVPLDHNKWWDLTALIVLLLLHRMLLVLVLRYINRSKLPLLWFHAKVSLHHFAGRFSSSSKPSISSKKQHAPPPLSSQEGLMSPNFAS 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2421 658 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 9 252 IPR003439 GO:0005524
Dere01g2421 658 SMART AAA_5 38 229 IPR003593 GO:0016887
Dere01g2421 658 Pfam ABC transporter 29 180 IPR003439 GO:0005524
Dere01g2421 658 Pfam ABC-2 type transporter 334 539 IPR013525 GO:0016020|GO:0140359
Dere01g2421 658 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 5 607 - -
Dere01g2421 658 Gene3D - 2 246 IPR027417 -
Dere01g2421 658 MobiDBLite consensus disorder prediction 627 658 - -
Dere01g2421 658 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 243 IPR027417 -
Dere01g2421 658 Pfam ABC-2 type transporter 209 328 IPR043926 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2421 Dere-ChrDere01 38640112 38647244 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2421 27 221 Calmodulin-binding Proteins AT2G36910 26.667 1.37e-09 59.7