Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2418 ATGGTCCAATATCACCGGTGCCATACGCTGAAGAAGTGTGGAGAATACGCGAAAGATGGTATCTTTGAATCACAGAGCCTTGACTTATATTTCCCCAGCTCTGCTTCCTGCAAGAGAGCGAGGCCCAAGTTGTTCTCTTTCTTGTTTCTCATTCTTCTCTGCTGCTGCTTTGTGTTAGCTTCTCTGTTTCTTGACTCTTCTTTCAGTTTATCTCTCTTGTATTCCTCTGAAACAGAACATGACAGTTCCTTGATTGGGATGGATGTAAATGCTTCTTTGTGCTCTCCAACCATATTATTTTCTCCCACGAATCATTTACACATGCTTGATAATGCAGGAGGAACTATATCTTGTGATAGAAGTGGCTATCGTTCTGATATCTGTACAATGAACGGAGATTTAAGAACACACTCTGCTTCCTCCTCAGTATTCCTTTACAACTTAAGATGCAATACTAATTTTAAAGAACGCAACAAAGTTGAAAAAGTTCAGGAATTCCTACATGAAAAGATCAAGCCCTATACCCGAAAATGGGAAACAAGCATTATGAATATCATTGCTGAATTACATCTGGTATCAAAGACAGTTAATTTAGGGGCTGATCATGACTGTGATGTCCAGCATGATGTTCCGGCAGTGTTCTTCTCCAATGGGGGCTATACGGGCAATGTCTATCACGAATTCAATGATGGGATCATACCTTTGTACATTACTTCCCAGCATTTGAAGAAGAAAGTTGTGTTTGTGATTCTTGAATATCATAATTGGTGGATCATGAAGTATAATGACATTCTTTCTCAACTATCAAATTTTCCAGCTATCGATTTTAGCAGAGACAACCGGACCCATTGCTTTCCAGAAGCCATTGTTGGTCTAAGAATCCATGATGAGCTTTCTGTAAACACTGCATTGATGGAGGGTAAGAAGAGCATTGTTGATTTCCGAAACCTTTTGGAATGTGCTTATCGGCCTCGAATTAAAAGCTTGATTCAACACGAGGAAAGGGAAGCAGCTCAAGCTAAATTGAGTAAAAAAGAGCAAGAAAATCAACGGAAGAAGCCCAAATTGGTGATTATCTCAAGAAGTGGGTCAAGAGCAATAACTAATGAGGATTTGATGGTGAAGATGGCAAAGGGAATTGGGTTTCAAGTGAAAGTATTAAGACCTGACAGAACAACAGAACTGGCAAAGATTTATGAGGCATTGAATGCAAGTGATGTAATGGTTGGAGTTCATGGTGCTGCTATGACTCATTTTCTGTTCTTGAGACCTGGCTGTGTGTTTATTCAAGTGGTTCCTTTAGGCACTACATGGGCATCAGAAACTTATTATGGGGAACCTGCAAGGAAGCTAAAATTGAAGTACATTGGCTATGAAATTCATCCTAAAGAGAGCTCTTTGTATGGGAAATATGATAAGAATGATCCTGTTCTTAGAGACCCAAGAAGCATTACCAAGAAAGGGTGGGAATTCACAAAGAAAATCTATCTAGACAACCAAAATGTTACATTAGACCTCAGAAGATTCCAGAAAAGGCTGCATCGTGCGTATGACTACACTGTCTCTAAATCTAATCTGCATCCTAAACAGGGAAGCATTATTTTGTTTCAGTATGGCAAGTTTCGTGTTAGGCAGATTTCATCATGGAGGGGACCATTCCCCAGGTCATGTGTCTCGGTTATGCAGCTCAGGGATCTTCTTATCTGGGATCCTTTTCAACTTCAGCTACCAACCACATTTGGAGTCAGGGATTCAGAGGACAGCAAGTGGTCACTTTTTAAAGTAACGCTTCTAGTTGTAGGAATTGCTATTGCTAGAATGACCGTATATCTTGGACCCTACTTCTGCATCATGCAGTGGACGATACTTCTGTGGCTTTCATCTGTTCAGACCTTTGGCAGTGCATTGTCTTTCTTGATGCTTTTAGAACCTTCCAAGCTTAATCTTCTGGAACGGGTTAAGAAAGAAGAGCTTTCTGGTTTTCAGTTGGGTTCTCAACTTCTCATCATGGTGAAGCTCATATCAGGTGGGGACTTAACTTTGGGTCCGAACCTTAGGCTCGGAATGGTAACGGTACATTGCTTTTGTATTCAAATTGGCCACACATGTCTTGGTCCTCAGCTTGGCAAAAGTGTTCGGCGGCATCAAAAGGAGGAGACTTTCAGGAGGCAGAGGGAAAAGAAAAGAAAAGAAATAATGGGGAGAGGGAAAATTGAGATAAAGAAGATAGAGAATTTGAATAACAGGCAGGTCACCTTCTCCAAGCGACGTAATGGGTTGCTCAAGAAGGCCAAGGAGTTGTCCGTTTTGTGTGATGCAGAGGTTGCAGTCATCATATTCTCTAGCACCGGGAAGCTTTACGAGTTTTCAAACACAAGCATGGAGCACACCCTTTCAAGGTACAGCAAAGGCCTGGAATTGGATTATACAGAGCAACCTTGTGATGAGCCACCAACTGAGGACACTGAGCCTCGTACAAATCTTCTAAAGGATGAATTAAGAAAGCTTCGTTTAGCATATTTAAGGATGATGGGGAAGGAGCTTGATGGATTGAAATTCAAAGAGCTGCAGAACCTAGAAAATCAACTGAGTGAAGGAATACTATCTGTTAAAGAAAAGAAGGAACAGGTACTTCTTGAGCAGCTTAGGAGATCCAGATTACAGGAGCAACAAGCCATGCTGGAGAACGAAGCTCTGCGCAAACAAATTGAGGAGATGCAGAATAAATCAAGCACACGCTTTGATTTCAATCCTTTAGATAGCAGGTTTTCCATCAACAATGGTTCCAACCCCATTTTCAACTGTGCCTCTGATGAAAGAGAGGAGCTTTCAGACACTTCCTTGCAATTGGGGCTGTCAACAGATTTTGGTCGCAAGAGGAAAGCACTGAAAATAGAACCTCGCAACGACTCAGCAGGGAGTCAACTAGCATCAGGATTGGAAAGCGTTCCATAG 2955 0.4156 MVQYHRCHTLKKCGEYAKDGIFESQSLDLYFPSSASCKRARPKLFSFLFLILLCCCFVLASLFLDSSFSLSLLYSSETEHDSSLIGMDVNASLCSPTILFSPTNHLHMLDNAGGTISCDRSGYRSDICTMNGDLRTHSASSSVFLYNLRCNTNFKERNKVEKVQEFLHEKIKPYTRKWETSIMNIIAELHLVSKTVNLGADHDCDVQHDVPAVFFSNGGYTGNVYHEFNDGIIPLYITSQHLKKKVVFVILEYHNWWIMKYNDILSQLSNFPAIDFSRDNRTHCFPEAIVGLRIHDELSVNTALMEGKKSIVDFRNLLECAYRPRIKSLIQHEEREAAQAKLSKKEQENQRKKPKLVIISRSGSRAITNEDLMVKMAKGIGFQVKVLRPDRTTELAKIYEALNASDVMVGVHGAAMTHFLFLRPGCVFIQVVPLGTTWASETYYGEPARKLKLKYIGYEIHPKESSLYGKYDKNDPVLRDPRSITKKGWEFTKKIYLDNQNVTLDLRRFQKRLHRAYDYTVSKSNLHPKQGSIILFQYGKFRVRQISSWRGPFPRSCVSVMQLRDLLIWDPFQLQLPTTFGVRDSEDSKWSLFKVTLLVVGIAIARMTVYLGPYFCIMQWTILLWLSSVQTFGSALSFLMLLEPSKLNLLERVKKEELSGFQLGSQLLIMVKLISGGDLTLGPNLRLGMVTVHCFCIQIGHTCLGPQLGKSVRRHQKEETFRRQREKKRKEIMGRGKIEIKKIENLNNRQVTFSKRRNGLLKKAKELSVLCDAEVAVIIFSSTGKLYEFSNTSMEHTLSRYSKGLELDYTEQPCDEPPTEDTEPRTNLLKDELRKLRLAYLRMMGKELDGLKFKELQNLENQLSEGILSVKEKKEQVLLEQLRRSRLQEQQAMLENEALRKQIEEMQNKSSTRFDFNPLDSRFSINNGSNPIFNCASDEREELSDTSLQLGLSTDFGRKRKALKIEPRNDSAGSQLASGLESVP 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2418 984 PRINTS MADS domain signature 755 770 IPR002100 GO:0003677|GO:0046983
Dere01g2418 984 PRINTS MADS domain signature 770 791 IPR002100 GO:0003677|GO:0046983
Dere01g2418 984 PRINTS MADS domain signature 735 755 IPR002100 GO:0003677|GO:0046983
Dere01g2418 984 Pfam K-box region 827 903 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere01g2418 984 Coils Coil 330 350 - -
Dere01g2418 984 ProSitePatterns MADS-box domain signature. 735 789 IPR002100 GO:0003677|GO:0046983
Dere01g2418 984 ProSiteProfiles K-box domain profile. 819 909 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dere01g2418 984 MobiDBLite consensus disorder prediction 964 984 - -
Dere01g2418 984 ProSiteProfiles MADS-box domain profile. 733 793 IPR002100 GO:0003677|GO:0046983
Dere01g2418 984 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 742 789 IPR002100 GO:0003677|GO:0046983
Dere01g2418 984 SUPERFAMILY SRF-like 734 811 IPR036879 GO:0003677|GO:0046983
Dere01g2418 984 Coils Coil 856 876 - -
Dere01g2418 984 Gene3D - 746 806 IPR036879 GO:0003677|GO:0046983
Dere01g2418 984 SMART madsneu2 733 792 IPR002100 GO:0003677|GO:0046983
Dere01g2418 984 FunFam MADS-box transcription factor MADS-MC 745 815 - -
Dere01g2418 984 Coils Coil 882 909 - -
Dere01g2418 984 Pfam Glycosyltransferase 61 292 428 IPR007657 GO:0016757
Dere01g2418 984 PANTHER GLYCOSYLTRANSFERASE 43 521 IPR007657 GO:0016757
Dere01g2418 984 CDD MADS_MEF2_like 734 804 IPR033896 GO:0000977|GO:0045944
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2418 Dere-ChrDere01 38563121 38577748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2418 733 951 MADS-box Gene Family AT3G57390 51.092 1.53e-56 193
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dere01g2418 DUF563 2.9e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2418 01 38563121 38577748 Dere01g2418 01 38563121 38577748 ECH