Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dere01g2414 | ATGGAGAATCTCTTACAGGATTTCGTTATAGAGCACAAGAGACCATCGGTCGAGGCTTCCATGAGATGGAGATCCGCCGTCTCGTTAGTGAAAAACCATCGGAGACGGTTCCGCATGGTCCCAGATCTCCAGAAACGTTCCGAAGTCGAGAAGAAGAGAAAGGAAATTCAGGATAAAGTTCGGGTTGCTCTCTTTGTTCAAAAGGCAGCATTACAGTTTATTGATGCTGGTGGTCGAGGTGAACACAAGCTACCGGAAGAGGTGAGAAAAGCTGGTTTTGGTATTGATCCTGATGAGGTTGCATCTATTGTTCGTACCCACGATCATGAAACATTGAAAAAAATTGGTGGAGTTAAAGAAATTGAGAAGAAACTCTCGGTCTCAGTAAATGAAGGTGTCAATGAAGACAGTGTAACTACGAGGCAACAGATTTATGGGTTCAACCGTTATACAGAAAAACCTTCTAGAAGCTTCCTGATGTTTGTGTGGGAAGCACTGCACGACTTAACCCTAATGATTCTCATGGTTTGTGCTGTAGTGTCTATAGGTGTAGGGATTGCCGCTGAAGGGTGGCCCACGGGTATGTATGATGGTTTGGGAATCATATTTAGTGTGTTCTTGGTAGTTATTGTTACTGCTGTCAGTGACTACCAGCAATCCTTGCAGTTCAGGGCTTTGGACAAAGAGAAGAAAAAGATCTTTGTTCAGGTCACTAGAGGTGGGAAAAGGCAGAAGATCTCGATTTATGACGTGGTAGTGGGAGATATTGTTTATTTGTCAACTGGGGATCAAGTTCCTGCTGATGGTATTTACATATCAGGATACAACCTGTTGATTGATGAATCGAGTTTGTCAGGTGAGAGCGAACCAGTAAATGTGCAAGAAGAAAAACCTTTCCTTCTTTCAGGAACCAAAGTGCAAGATGGTCAGGGGAGGATGCTAGTGACAACTGTTGGCATGAGGACTGAATGGGGAAAGTTAATGGAAACTTTAAGCGAGGGAGGAGATGATGAGACCCCCTTGCAAGTGAAATTGAATGGAGTTGCTACAATTATTGGTAAGATTGGCTTGACTTTCGCTGTGCTGACATTTTTGGTGTTGACGACGAGGTTTGTGGTGGAAAAGGCAATTCATGGTGATTTTACTCATTGGTCACCAAATGATGCGGTAAAGCTGCTAAACTACTTTTCTATTTCCGTTACCATTATAGTTGTTGCAGTTCCTGAAGGATTACCTTTGGCCGTGACACTCAGCCTTGCTTTTGCAATGAAAAAATTAATGAATGACAGGGCACTTGTGAGGCATCTTTCTGCATGTGAGACCATGGGTTCAGCTAGCTGCATTTGCACAGATAAGACGGGGACATTAACCACTAACCATATGGTGGTTGATAAAATATGGATATGCGAAAAAGCTATGAAAATCGAAGGTAATGAGAATGGAGCCAGAGCAAAATCAGAGATATCTGAAGGAGTTCTGGGCGTCCTTTTGCAGGCCATATTTCAAAATACTTCTTCTGAAGTAGTCAAGGGTCAAGACGGAAAGAACACAATATTAGGAACACCAACTGAATCAGCATTGTTGGAATTTGGCTTGCTTTTGGATGGTGATTTTGATGCCCAGCGCAAAGAGTATAAAATACTTGAGATTGAGCCTTTCAATTCAGTCCGGAAGAAGATGTCTGTTCTTGTTGGTCTTCCAGATGGAGGGGTACGAGCTTTCTGCAAAGGTGCATCAGAAATAATATTAAAAATGTGTGACAAAATTATTGACTGCAATGGAGAAACTGTTGATCTTCCTGAAGACCGGGCAAAGAATGTCTCTGATGTTATAAACAGTTTTGCCTCTGATGCTTTAAGAACTCTTTGTTTGGCTGTCAAAGATATAGATGTAAACCAAGGAGAAACCAGTATCCCTGCTAATGGATACACACTGATAGCCATTGTAGGAATCAAGGATCCTGTGCGCCCTGGAGTCAAGGATGCGGTTCAAACTTGTTTAGCAGCTGGAATAACCGTCCGTATGGTCACTGGTGATAATATTAACACAGCTAGGGCCATAGCTAAAGAATGTGGTATACTCACTGAGGGTGGTGTAGCCATAGAAGGACCAGAATTTCGCAACTTGTCTCCAGAGCAAATGAAGGATATGATACCAAGAATTCAGGTAATGGCACGATCCTTGCCACTTGACAAGCATACCTTGGTAACCCATTCGAGGAACACTTTTGGTGAAGTTGTTGCTGTTACCGGCGATGGAACTAATGATGCTCCTGCTCTGCATGAATCAGATATTGGACTTGCCATGGGCATTGCTGGTACAGAGGTTGCCAAAGAAAATGCAGATGTGATCATAATGGATGATAACTTCACCACAATTGTGAACGTGGCCAGGCGGGGGCGAGCAGTATATATCAACATTCAAAAATTTGTGCAGTTTCAGTTAACAGTCAATGTTGTTGCTCTGGTGATCAACTTTGTCTCTGCATGCATCACAGGATCTGCTCCACTAACAGCTGTACAATTGCTATGGGTGAACCTGATTATGGACACTCTGGGTGCACTGGCTCTGGCCACTGAGCCTCCCACTGATGAACTTATGAAAAGGCCCCCAGTTGCAAGGGGGGCAAGCATTATCACCAAAACCATGTGGAGAAATATCATTGGACAAAGTATATATCAATTACTTGTCCTTGGCATTCTAAATTTTGCCGGCAAGAGGCTACTCAGGATAAGCAGTTCAGATGCAACTATTGTGCTCAACACTTTGATATTCAACTCCTTTGTATTTTGCCAGGTCTTCAATGAGATAAACAGCCGAGACATGGAAAAGATAAATGTATTCAAAGGCATATTCGACAGCTGGATATTCTTAGGGATAATTTTCTCCACAGTGGCATTTCAAGCAATCATAGTTGAGTTCTTGGGAACTTTTGCCGGGACGGTGCCTCTAAACTGGCAACTCTGGTTACTCAGTGTGCTAATTGGAGCAGTAAGCATGCCAATATCAGCTATTGTGAAGTGTATCCCAGTTGAAAGAGATACCATTATTAAACACCACGATGGTTACGAGGCATTGCCTTCTGGTCCCGAGCTAGCATAA | 3102 | 0.4294 | MENLLQDFVIEHKRPSVEASMRWRSAVSLVKNHRRRFRMVPDLQKRSEVEKKRKEIQDKVRVALFVQKAALQFIDAGGRGEHKLPEEVRKAGFGIDPDEVASIVRTHDHETLKKIGGVKEIEKKLSVSVNEGVNEDSVTTRQQIYGFNRYTEKPSRSFLMFVWEALHDLTLMILMVCAVVSIGVGIAAEGWPTGMYDGLGIIFSVFLVVIVTAVSDYQQSLQFRALDKEKKKIFVQVTRGGKRQKISIYDVVVGDIVYLSTGDQVPADGIYISGYNLLIDESSLSGESEPVNVQEEKPFLLSGTKVQDGQGRMLVTTVGMRTEWGKLMETLSEGGDDETPLQVKLNGVATIIGKIGLTFAVLTFLVLTTRFVVEKAIHGDFTHWSPNDAVKLLNYFSISVTIIVVAVPEGLPLAVTLSLAFAMKKLMNDRALVRHLSACETMGSASCICTDKTGTLTTNHMVVDKIWICEKAMKIEGNENGARAKSEISEGVLGVLLQAIFQNTSSEVVKGQDGKNTILGTPTESALLEFGLLLDGDFDAQRKEYKILEIEPFNSVRKKMSVLVGLPDGGVRAFCKGASEIILKMCDKIIDCNGETVDLPEDRAKNVSDVINSFASDALRTLCLAVKDIDVNQGETSIPANGYTLIAIVGIKDPVRPGVKDAVQTCLAAGITVRMVTGDNINTARAIAKECGILTEGGVAIEGPEFRNLSPEQMKDMIPRIQVMARSLPLDKHTLVTHSRNTFGEVVAVTGDGTNDAPALHESDIGLAMGIAGTEVAKENADVIIMDDNFTTIVNVARRGRAVYINIQKFVQFQLTVNVVALVINFVSACITGSAPLTAVQLLWVNLIMDTLGALALATEPPTDELMKRPPVARGASIITKTMWRNIIGQSIYQLLVLGILNFAGKRLLRISSSDATIVLNTLIFNSFVFCQVFNEINSRDMEKINVFKGIFDSWIFLGIIFSTVAFQAIIVEFLGTFAGTVPLNWQLWLLSVLIGAVSMPISAIVKCIPVERDTIIKHHDGYEALPSGPELA | 1033 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dere01g2414 | 1033 | SFLD | C1.7: P-type atpase like | 431 | 802 | - | - | |
| Dere01g2414 | 1033 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 455 | 659 | IPR023299 | GO:0000166 | |
| Dere01g2414 | 1033 | FunFam | Calcium-transporting ATPase | 767 | 1013 | - | - | |
| Dere01g2414 | 1033 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 6 | 48 | IPR024750 | GO:0005516 | |
| Dere01g2414 | 1033 | Gene3D | - | 132 | 332 | - | - | |
| Dere01g2414 | 1033 | Gene3D | - | 459 | 654 | IPR023299 | GO:0000166 | |
| Dere01g2414 | 1033 | FunFam | Calcium-transporting ATPase | 459 | 654 | - | - | |
| Dere01g2414 | 1033 | CDD | P-type_ATPase_Ca_PMCA-like | 138 | 883 | - | - | |
| Dere01g2414 | 1033 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 116 | 1011 | IPR023298 | - | |
| Dere01g2414 | 1033 | FunFam | Calcium-transporting ATPase | 211 | 332 | - | - | |
| Dere01g2414 | 1033 | FunFam | Calcium-transporting ATPase | 647 | 795 | - | - | |
| Dere01g2414 | 1033 | Pfam | E1-E2 ATPase | 234 | 427 | - | - | |
| Dere01g2414 | 1033 | NCBIfam | HAD-IC family P-type ATPase | 384 | 473 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Dere01g2414 | 1033 | NCBIfam | HAD-IC family P-type ATPase | 201 | 371 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Dere01g2414 | 1033 | NCBIfam | HAD-IC family P-type ATPase | 721 | 838 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Dere01g2414 | 1033 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 106 | 1012 | IPR006408 | GO:0005388|GO:0005524|GO:0016020|GO:0070588 | |
| Dere01g2414 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 774 | 786 | - | - | |
| Dere01g2414 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 750 | 769 | - | - | |
| Dere01g2414 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 280 | 294 | - | - | |
| Dere01g2414 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 669 | 679 | - | - | |
| Dere01g2414 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 449 | 463 | - | - | |
| Dere01g2414 | 1033 | PRINTS | P-type cation-transporting ATPase superfamily signature | 647 | 658 | - | - | |
| Dere01g2414 | 1033 | SFLD | p-type atpase | 431 | 802 | IPR044492 | - | |
| Dere01g2414 | 1033 | Gene3D | - | 164 | 1009 | - | - | |
| Dere01g2414 | 1033 | Gene3D | - | 446 | 795 | IPR023214 | - | |
| Dere01g2414 | 1033 | FunFam | Calcium-transporting ATPase | 15 | 75 | - | - | |
| Dere01g2414 | 1033 | FunFam | Calcium-transporting ATPase | 164 | 221 | - | - | |
| Dere01g2414 | 1033 | PANTHER | CATION TRANSPORTING ATPASE | 79 | 1011 | - | - | |
| Dere01g2414 | 1033 | Pfam | Cation transporter/ATPase, N-terminus | 116 | 181 | IPR004014 | - | |
| Dere01g2414 | 1033 | SMART | Cation_ATPase_N_a_2 | 108 | 186 | IPR004014 | - | |
| Dere01g2414 | 1033 | Pfam | Cation transporting ATPase, C-terminus | 835 | 1008 | IPR006068 | - | |
| Dere01g2414 | 1033 | SUPERFAMILY | Calcium ATPase, transduction domain A | 234 | 330 | IPR008250 | - | |
| Dere01g2414 | 1033 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 451 | 457 | IPR018303 | - | |
| Dere01g2414 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 607 | 625 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Dere01g2414 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 782 | 807 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Dere01g2414 | 1033 | PRINTS | H+-transporting ATPase (proton pump) signature | 750 | 766 | IPR001757 | GO:0005215|GO:0005524|GO:0016020|GO:0016887 | |
| Dere01g2414 | 1033 | Gene3D | - | 15 | 76 | - | - | |
| Dere01g2414 | 1033 | Pfam | Cation transport ATPase (P-type) | 506 | 589 | - | - | |
| Dere01g2414 | 1033 | SUPERFAMILY | HAD-like | 448 | 855 | IPR036412 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dere01g2414 | Dere-ChrDere01 | 38502756 | 38511767 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dere01g2414 | 56 | 1030 | Primary Pumps ATPases | AT3G57330 | 72.615 | 0.0 | 1461 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Dere01g2414 | 01 | 38502756 | 38511767 | Dere02g1443 | 02 | 13976405 | 13984700 | CCT | |
| Dere01g2414 | 01 | 38502756 | 38511767 | Dere01g2414 | 01 | 38502756 | 38511767 | ECH |