Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2410 ATGGATCACAGAAGGCAACCCAGGGACTCGCTCTCGTACTCTAGTCTCTTCAATCTTGAGTCTTTGATGAATTTTCAACTTCCACAACAAGATGATGATTTTGATTATTATGGGAATAGTAGTCAGGATGAGAGCAGAGATAGCCAAGGTGGGGCAATTGCAAACCACAGTAATGGGAATGTGCGCAGAAGGGAGGTAAATTTGTTGAAGAAGAGGAAGTGGTCTCAAAACAGTGACGACGAGGACAAGGGTATTTTTTATGGGACACACATGACAGAGGAGCGGTACCGATCAATGCTTGGAGAACATATTCAGAAATACAAGAGGAGGTATAAAGATACATCCTCTAGTCCTGCCCAAAATCGGGTTGGTGCTCCACTTCTAAAAAGTAATATAGGTTTGAAAGCTCGGAAGTCAGGGAATGAGCACAGAGGAGGATTACATGCTCTGGAGACTACATCTGAGTGGCCAAATGATACTAATCCTCAGAAACCTGTAAACTACCGTGATACAGAATTCACACAGCATTATGGCCATGATAGAACTATCTATGAACCAGCTTCTTTAGACATTGAGGATGGTGTCACTTACAAAATTCCTCCCACTTATGACAAGTTAGCAGCAATGTTGAACCTTCCAAGTTTCTCCGATATCCAGGTGGAGGAATTTTACTTAAAGGGTACCTTGGATTTGGGGTCCTTGGCTGCAATGATGGCTTCTGATAAGAGGGTTGGGACTAGAAACCGAGCAGGCATGGGGGAAACCCTATCTCAATATGAATCGCTTCAGGCACGATTGAAGGCCATGTCAGCATCTAATTCGCCCCATCAATTTAGTCTGAAAGTATCTGATATTGGTTTGAATTCTTCCATCCCAGAGGGAGCTGCTGGAACTATAAAGCGATCTATTTTGTCTGAGGGTGGTGTATTGCAGGTTTATTATGTGAAGGTTCTGGAGAAAGGTGACACATATGAGATCATTGAACGAAGCCTACCTAAGAAGCAGAAGGTGAAAAAAGACCCTGCTTTGATTGAGAAGGAGGAAATGGAAAGAATTGGAAAGGTTTGGGTGAATATTGTAAGAAGAGACATACCTAAACATCATAGAATTTTTACTGCTTTTCATCGAAAGCAACTTGTCGATGCCAAGAGATTCTCGGAGAACTGTCAAAGAGAGGTCAGAATGAAAGTGAGTAGATCACTCAAATTGATGAAGAGTGCAGCCATTCGCACCCGGAAACTAGCTAGAGATATGTTACTTTTCTGGAAACGAGTAGATAAGGAGATGGCAGAAGTGAGGAAAAAAGAGGAGAAAGAAGCTGCTGAGGCTTTGAGGCGTGAACAGGAGCTTCGAGAAGCAAAGAGGCAGCAGCAAAGGCTTAATTTTCTTATACAGCAAACCGAGCTATACAGTCACTTCATGCAGAACAAGTCAAACTTACTGTCTTCTGAAGCTTTACCTATAGCAGATGAAAAAGCAGATGATCAAGATGCACTACTTGGCTCTTCAGAGGCTGGGCCTAGTGAGGAGGAAGATCCTGAAGAGGCTGAACTTAAGAAGGAAGCTCTGAAGGCTGCTCAAGAAGCAGTCTCTAAGCAGAAAAAGTTGACTAGTGCTTTTGACAGTGAATGCTTGAGGCTGCGTCAGGCTGGTGAAACCGATGCACTTTCGCAGGAAGTTGCAGGAGCGAGTAACATTGATTTGCAAACCCCTTCAACAATGCCAGTGGCATCAACAGTTCGGACTCCAGAGCTGTTTAGAGGTTGTCTTAAAGAATATCAGCTAAAAGGTCTTCAGTGGCTAGTTAATTGTTATGAGCAGGGTCTGAATGGTATACTTGCTGATGAAATGGGACTTGGAAAGACTATCCAGGCCATGGCCTTTTTAGCTCATTTAGCTGAGGAGAAAAATATATGGGGCCCGTTTTTGGTTGTTGCTCCTGCATCTGTATTAAACAATTGGAATGAGGAACTTGAGCGCTTTTGCCCTGAAATGAGAGTGCTTCCTTATTGGGGCGGGCTTCACGAGCGGACGGTACTAAGGAAAAGTATTAACCCGAAGGATCTATATCGTAGGGAAGCTAAGTTCCACATTCTAATCACAAGCTACCAGCTACTAGTATCTGATGAAAAGTACTTTCGGCGTGTGAAATGGCAGTACATGGTATTAGATGAAGCCCAGGCGATTAAAAGTTCAAACAGTATAAGATGGAAGACACTCCTCAGTTTTAATTGTCGGAATCGCCTGCTTCTGACTGGTACACCAATTCAGAATAATATGGCAGAGTTGTGGGCCCTTCTGCATTTCATTATGCCAACTTTATTCGATAGCCATGAGCAGTTTAATGAATGGTTTTCAAAAGGAATTGAGAACCATGCAGAACATGGAGGTACTTTGAATGAACACCAACTTAACAGATTGCATTCAATTCTAAAGCCCTTTATGCTGCGACGGGTTAAAAAAGATGTAATATCTGAGCTAACTAGGAAAACAGAGGTTACTGTACACTGCAAGTTGAGTTCTCGGCAGCAAGCTTTCTATCAAGCAATTAAGAATAAGATATCTCTCGCTGAGTTGTTTGATAGTAATCGTGGGCAGCTCAATGAGAAGAGAATTCTAAATTTGATGAACATCGTTATTCAACTAAGAAAGGTTTGCAACCATCCAGAGTTGTTTGAGAGAAGTGAGGGAACCACATACTTCAACTTTGGCGAGATTCCAAATTCCCTTCCACCTCCTCCATTTGGGGAGTTGGAGGACGTGTACTATTCTGCGGGTCACAATCCCATATCATACAAGATGCCAAAACTTGTCCATCAAGAAATCATGCGGGGTTCTATAATGCTCAGCTCAAATGTTGCTCGTGGTGTCAGTGCAGACTCTTTTCAGAAATATTTTAATATCTATAGCCCAGAAAATGTTTTTCGATCTATCTTCTCTCAAGGGAATATATCAAATGGGTTATGTGTTAAAAGTGGAACTTTTGGTTTTACCCATTTGATGAATTTGTCCCCACAAGAAGTGACGTTTTCAGCTACTGGTTCTTTTATGGAGCAAATACTATTTTCTATGGTGAGATGGGAACAGAAATTTATTGACGAAGCTGTAGACTTTCTTACAGAGACTATAGATAATGATCCTGAATGCAGTTACCTTGAAAAAGAAAAAGTGAGGGCTGTTACACGAATGTTATTGGTGCCAACAAGATCCGACACTAAGATTTTTCAAAGAAAATTTGCAACTGGGCCCAGCCATTCCCCTTTTGAGGCCTTGGTTGTCCCATATCAGGATAAGATTTTATCCAATGCAAGGCTTCTTCACTCAGCATACACATATATCCCTCGGACTAGAGCTCCCCCAATTGGTGCCCACTGCTCAGATCGAAACTTCTCTTATAAAACAATGGAAGAATTACATGACCCTTGGGTTAAGAGATTGTTTGTGGGATTTGCACGTACATCTGAGTATAATGGACCTAGAAAACCAGATGGTCCTCCCCATCATTTAATTCAAGAGATTGATTCTGAGCTACCAGTTGCACAGCCTGCTCTTCAGTTAACCTACAAAATTTTAGGTTCTTCACCTCCTATGCAAAATTTTGACCCAGCGAAATTGCTCACTGACTCTGGGAAGCTTCAAACACTTGATATATTATTAAAACGCTTGCGAGCTGAAAATCATCGTGTACTCTTGTTTGCTCAGATGACTAAGATGCTGAATATTCTTGAGGACTATATGAACTACAGAAAGTATAGATATTTTAGACTTGATGGATCATCAGCTATTCAGGACCGCAGAGACATGGTTAGAGACTTCCAGCACAGGAGTGATATTTTTGTGTTCTTACTGAGTACAAGAGCTGGTGGATTGGGTATCAACTTGACAGCTGCTGACACAGTAATTTTTTATGAGAGTGATTGGAATCCAACATTGGATCAGCAGGCAATGGATAGAGCTCATCGTTTGGGTCAGACAAAAGATGTTACTGTTTACCGACTTATATGTAAAGAGACAGTTGAAGAGAAGATTCTTCTTAGAGCAAGTCAAAAAAGCACTGTACAGAACCTTGTCATGACTGGTGGTTCTGTCGGTGATCTTTTAGCTCCTGAGGATGTTGTATCTTTGCTTCTGGATGATGTGCAGTTGGAGCAGAAATTGAAGGAAATTCCTCTCCAGGTAAAGGATAAGCAAAAGAGAAAACAAACTGTGAAGGGTATACGCGTAAATGAAGAAGGTGATGCATCTCTGGAAGACCTAACAAACAATGAAGCGCAGGGTACAGATAACGATATTTCTCTTGACCCAGAGGGATCAAAGTCCAGTAATAAAAAGAGAAAAGCTGCCTCTGACAAGCGAACTGCATCCAGGGCCAAGAATTCTCAAAAGATGAATGAGCTTATGCCTATGGACAGTGAGTTGTATTATGCTAATCAAAGTACTGATCCACCGGGCCAGAAACCCAAGAGACCAAAGAAGGCAAAGAAGGTTGGAAATGAGAAGTTTGAAGACTCTTTTGCTGCTACAGCTAATGTATTCCCCGAGCAGATCCAATTTCCACTTCCACGTGATTTTAGTAATGGAGGTTCAAAAGCAGAAACAGGGTAA 4605 0.4178 MDHRRQPRDSLSYSSLFNLESLMNFQLPQQDDDFDYYGNSSQDESRDSQGGAIANHSNGNVRRREVNLLKKRKWSQNSDDEDKGIFYGTHMTEERYRSMLGEHIQKYKRRYKDTSSSPAQNRVGAPLLKSNIGLKARKSGNEHRGGLHALETTSEWPNDTNPQKPVNYRDTEFTQHYGHDRTIYEPASLDIEDGVTYKIPPTYDKLAAMLNLPSFSDIQVEEFYLKGTLDLGSLAAMMASDKRVGTRNRAGMGETLSQYESLQARLKAMSASNSPHQFSLKVSDIGLNSSIPEGAAGTIKRSILSEGGVLQVYYVKVLEKGDTYEIIERSLPKKQKVKKDPALIEKEEMERIGKVWVNIVRRDIPKHHRIFTAFHRKQLVDAKRFSENCQREVRMKVSRSLKLMKSAAIRTRKLARDMLLFWKRVDKEMAEVRKKEEKEAAEALRREQELREAKRQQQRLNFLIQQTELYSHFMQNKSNLLSSEALPIADEKADDQDALLGSSEAGPSEEEDPEEAELKKEALKAAQEAVSKQKKLTSAFDSECLRLRQAGETDALSQEVAGASNIDLQTPSTMPVASTVRTPELFRGCLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTIQAMAFLAHLAEEKNIWGPFLVVAPASVLNNWNEELERFCPEMRVLPYWGGLHERTVLRKSINPKDLYRREAKFHILITSYQLLVSDEKYFRRVKWQYMVLDEAQAIKSSNSIRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIENHAEHGGTLNEHQLNRLHSILKPFMLRRVKKDVISELTRKTEVTVHCKLSSRQQAFYQAIKNKISLAELFDSNRGQLNEKRILNLMNIVIQLRKVCNHPELFERSEGTTYFNFGEIPNSLPPPPFGELEDVYYSAGHNPISYKMPKLVHQEIMRGSIMLSSNVARGVSADSFQKYFNIYSPENVFRSIFSQGNISNGLCVKSGTFGFTHLMNLSPQEVTFSATGSFMEQILFSMVRWEQKFIDEAVDFLTETIDNDPECSYLEKEKVRAVTRMLLVPTRSDTKIFQRKFATGPSHSPFEALVVPYQDKILSNARLLHSAYTYIPRTRAPPIGAHCSDRNFSYKTMEELHDPWVKRLFVGFARTSEYNGPRKPDGPPHHLIQEIDSELPVAQPALQLTYKILGSSPPMQNFDPAKLLTDSGKLQTLDILLKRLRAENHRVLLFAQMTKMLNILEDYMNYRKYRYFRLDGSSAIQDRRDMVRDFQHRSDIFVFLLSTRAGGLGINLTAADTVIFYESDWNPTLDQQAMDRAHRLGQTKDVTVYRLICKETVEEKILLRASQKSTVQNLVMTGGSVGDLLAPEDVVSLLLDDVQLEQKLKEIPLQVKDKQKRKQTVKGIRVNEEGDASLEDLTNNEAQGTDNDISLDPEGSKSSNKKRKAASDKRTASRAKNSQKMNELMPMDSELYYANQSTDPPGQKPKRPKKAKKVGNEKFEDSFAATANVFPEQIQFPLPRDFSNGGSKAETG 1534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2410 1534 PANTHER HELICASE SRCAP-RELATED 88 522 - -
Dere01g2410 1534 MobiDBLite consensus disorder prediction 30 64 - -
Dere01g2410 1534 MobiDBLite consensus disorder prediction 1394 1500 - -
Dere01g2410 1534 CDD SF2_C_SNF 1202 1334 - -
Dere01g2410 1534 MobiDBLite consensus disorder prediction 1437 1458 - -
Dere01g2410 1534 SMART helicmild6 1240 1323 IPR001650 -
Dere01g2410 1534 MobiDBLite consensus disorder prediction 495 521 - -
Dere01g2410 1534 SMART ultradead3 586 781 IPR014001 -
Dere01g2410 1534 FunFam Putative DNA helicase INO80 562 840 - -
Dere01g2410 1534 MobiDBLite consensus disorder prediction 30 62 - -
Dere01g2410 1534 Coils Coil 427 466 - -
Dere01g2410 1534 Pfam SNF2-related domain 605 892 IPR000330 GO:0005524|GO:0140658
Dere01g2410 1534 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 602 773 IPR014001 -
Dere01g2410 1534 Pfam DNA-binding domain 350 479 IPR020838 GO:0003677
Dere01g2410 1534 MobiDBLite consensus disorder prediction 1394 1414 - -
Dere01g2410 1534 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1214 1397 IPR001650 -
Dere01g2410 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 820 1364 IPR027417 -
Dere01g2410 1534 ProSiteProfiles DBINO domain profile. 355 480 IPR020838 GO:0003677
Dere01g2410 1534 Gene3D - 1181 1430 IPR027417 -
Dere01g2410 1534 MobiDBLite consensus disorder prediction 1418 1436 - -
Dere01g2410 1534 Pfam Helicase conserved C-terminal domain 1214 1323 IPR001650 -
Dere01g2410 1534 Gene3D - 587 827 IPR038718 -
Dere01g2410 1534 FunFam DNA helicase INO80-like protein 1182 1432 - -
Dere01g2410 1534 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 574 818 IPR027417 -
Dere01g2410 1534 Gene3D - 828 898 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2410 Dere-ChrDere01 38439268 38450052 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2410 611 903 RAD5 or RAD16-like Gene Family AT5G43530 29.204 5.46e-27 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Dere01g2410 SNF2_N 7.3e-68 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2410 01 38439268 38450052 Dere01g2410 01 38439268 38450052 ECH