Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2401 ATGCAATCTCATCAGAAGCCAAAGAAATTGGGGTGGAATCTTGGAAGGTTGAAGCTGAAACAGTGTTCTGCACTTACAGCACCAAATAGAACGCTTAGTGAAGCAAGAGAAGAACAGAAAAAGCATGCTTTGACCGTGGCTATTGCAACAGCAGCCGCTGCAGAGGCTGCTGTTGCTGCTGCTCATGCTGCTGCTGAGGTTGTCCGGCTTACGGGAGATTCTCGTTCCTATTCTTATCTGTCCGACAGAAATTTGGCTGCCATTAAGATTCAAAGCGCATACCGTGGACATCTAGCTAGGAAAGCACTGAGAGCATTGAAGGGAGTTGTAAGATTACAAGCTATAGTTCGTGGTCAAGCTGTCAGACGTCAAGTATTTAGCACTTTGAAGCATTTGCCCTCCAGTGCAAGAGAGCAGGTAGAAATCCAGCAAAGGAACAGTCATGGTGCAGAAGAAAGCTACAAAAATGACAAGAGCAATCAGTCTCCAAAGCAAAAGAAGAAGATAGAAGAGAGGGAAATTAAGCCTGAATGCCTTAGTCAGAGGAATTGGGATTGCAGCTTGCATTCGAAAGAAGACATCGAAGCCATCTGGTTGAGAAAGCAAGTGGCCACACTCAAAAGAGAACGCATGAAGCAGTATTCCTTCTCACACAGGGAAAGAAAAATTTCCCACATGGTAGAAGAATATGCAACCAGTAAGGATTTCGGAAGAGGGAGCTGCCGTACTCTAGGACAATGGCTGCATGAAGAAACATGTAATAGGGATGCGTTTTATAAACCAGATCTTTCCGCAAACCTGATCACAAGGGAATTGTATGGTTCAACACAAGTTGCACTGAATAAAAGAGAAGACTCGCAAGAAGGATTGAATTCACAAATTTTATTACCAAGGAAATCATTTTCTCATGGAAAGAAAGGGTCAGTTGGGGATGATAGTTCCATGCCAAATTCTCCAGTTTTTCCCACTTATATGGCTGTGACGGAATCCGCCAAGGCAAAGGCAAGGTCAATGAGCACACCAAGGCACAGATCAGAATTTCAGGAATTATGCTTCCATCAGAGTGAGGATCACAAGGAAGGAATATCTTTCTGGTCTTCTCATTATGGCGCACCAGCCAGCACCAATAGAAACAGTGAAGTTTCTCGGCAGAGATGTCGGAGTGCAACTCACCATCATTATCATTAG 1188 0.4411 MQSHQKPKKLGWNLGRLKLKQCSALTAPNRTLSEAREEQKKHALTVAIATAAAAEAAVAAAHAAAEVVRLTGDSRSYSYLSDRNLAAIKIQSAYRGHLARKALRALKGVVRLQAIVRGQAVRRQVFSTLKHLPSSAREQVEIQQRNSHGAEESYKNDKSNQSPKQKKKIEEREIKPECLSQRNWDCSLHSKEDIEAIWLRKQVATLKRERMKQYSFSHRERKISHMVEEYATSKDFGRGSCRTLGQWLHEETCNRDAFYKPDLSANLITRELYGSTQVALNKREDSQEGLNSQILLPRKSFSHGKKGSVGDDSSMPNSPVFPTYMAVTESAKAKARSMSTPRHRSEFQELCFHQSEDHKEGISFWSSHYGAPASTNRNSEVSRQRCRSATHHHYH 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2401 395 Gene3D - 82 133 - -
Dere01g2401 395 MobiDBLite consensus disorder prediction 284 321 - -
Dere01g2401 395 Pfam Protein of unknown function (DUF4005) 313 349 IPR025064 -
Dere01g2401 395 MobiDBLite consensus disorder prediction 136 172 - -
Dere01g2401 395 SMART iq_5 82 104 IPR000048 GO:0005515
Dere01g2401 395 MobiDBLite consensus disorder prediction 284 298 - -
Dere01g2401 395 Pfam IQ calmodulin-binding motif 86 104 IPR000048 GO:0005515
Dere01g2401 395 MobiDBLite consensus disorder prediction 372 395 - -
Dere01g2401 395 ProSiteProfiles IQ motif profile. 107 134 IPR000048 GO:0005515
Dere01g2401 395 ProSiteProfiles IQ motif profile. 83 111 IPR000048 GO:0005515
Dere01g2401 395 PANTHER IQ-DOMAIN 5-RELATED 29 367 - -
Dere01g2401 395 MobiDBLite consensus disorder prediction 144 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2401 Dere-ChrDere01 38389236 38391122 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2401 2 376 IQD Protein Family AT5G03960 42.257 1.97e-64 209