Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2396 ATGGCGCCAAAAACACTACCTTCCTCTCCGATCCCAATTGGTAATTGCCTGATTGCCATTGAGGCAAAAAATTTCACCTGTAAATCGGATTCAAATGGCCTCCAAATTTCTCTCCCCAGAAACGGAAAGATAAAAGTATCAGTTGCAAAAGATGTGGCTACAAATAATAGAAATGATTCTGAGAATATAAAGCCCAAAGATAGAGAGCATGAGTTCGTGCTTGTTAATCCTAAGGATGCTGATAGCACTAGTAAATCCCATCTGCAGGAAGTATTGCAGATGTATATGACAGAACTACCTGGAATGAATTATGCTGCGAATACTGGAAAGCTATCAAAGTTTCTTGAAAGATGTGTGACTAATGGGAAATATCGTACACTGCTTCTGAAATCTGATTCTGTTGGCAAATCTGAAAAGGTTATAGCTGCAATTACATATCAAATAGTCCCTGCAGACACAGAGTATGCAGAGATCCCACTTGCAGCAGTTAGGGCGATCTATCAACGAAAGGGTCTTGGTCATCTGTTGTTTCTAGAGCTACGGAAGAGACTTCACAATGTTGGTATTCGTTCAATTTTCTGTTGGGGAGACAAAGAATCTGAAGGGTTTTGGCTTAAACAGGGTTTTATATCAATAGCAGAGGTGGACACTAAAGGTAGAGCTCGCAGGTTACCGATAAAAGCTGACATTCGTAAAGCATTATGCTTTCCTGGTGGTTCAACTCTCATGGTTTGCCATCTAAGGATGGAATTCTTAGCTGATGCTGCTAACTCTAGGAAGTGTCTTCCCTCACAGCTTCATCAGAATTCCTTGACATCTGCCAATGCTGAAAATGATGAGCTTCCATTTACAGGACAATTGCACATTGATTTGAACTTTTCAAATAAATCTACTGATAGAACAGATAATACAGAGAATGGTCATTCTGGAGCTTCAGTGAAAGATAGATTTTCAAGAGAATATGATAGATTGAGTGATGGCAACACACTGGCCACTGGTGCAGCACATTCAAACAATGGAATTGATACTGAAATGAAGGATTGTTCTAATTTTACAAATGGTGCAAAGAGGACCTGGGAAGCCTCTTTGTCATCATTGAAGTCTAAAAGAGTGAAGGGAAGCCACTTAGTTGACTGTAGATCAGATTCTAGCTGGGATTTTGTCTCAGAGGCTGATAGGACCAATTCTTGTTTTGTGGGATGCTTATTGGACGCTTCAAGAGGAAAAAGTTCAGTGGAACTTCCTTGTGGTGATTCTTTAATTTTCAGAGAAAATATTACTGAGAAACTTGAAGGGGATTGTTTATATTCAGAAGCTCTTATCAACAATGAACTACCATCAACTAAACAATGCTTTAGAATCATGCTAATGAATATTGCTGATGATGCTAAGAAAACACACCTTACAAAGGTAATTGAAGACCTTGGCGGCACTGTTACCTCTGAAGGAAGGATGACCACACACGTTGTCACAGGCAAAGTGAGGAAAACTTTGAATTTCTGCACTGCCCTCTGTTCAGGGGCTTGGGTGGTCTCATCAGATTGGTTAAAAGAAAGCTTTCGTGAAGGCAAATTTGTGGATGAGATGTCTTACATACTAAATGATAAGGATTATCCAGTGAAGTACAGATCTGATTTAAAAACTTCAGTTCTCCGAGCAAAAGCCAACCCCCAAGCTTTGTTCAAGGGATATAATGTATGTATTGCAGCTCATGTTCAACCTCCTGCTAAAACCCTATCTGCAATCGTGACGTCTGCTGGCGGCAATGTTATTTGTGGATTTGAGAAGGTAAAGGAAGCATCCTCGACCATTTTTGTGACATGTGAAGAAGATATGGAAGAGGCAATGGTAGCTGCAAAGAAAGGGATACGGACTTTTAGTAGTGAGTGGTTTATGAACTGTGTCATGAGACAGGAACTTGATATGGAGGCCTCCCAATTTGCGGACAGCGAAGCAGATGTATGCCACGAGGTGAAATTAAACCATATGGGAGGGGAGCGATATCTAGTTGACTGGGGTGAAAAAGCACTGGCAAATTTGTTCAATACCTCTGATAAGAGTCATAAGTTTAGACCGTGGAGGGAAGGAGGAGGCGAGGAGTTGGGGTGGTAG 2112 0.4091 MAPKTLPSSPIPIGNCLIAIEAKNFTCKSDSNGLQISLPRNGKIKVSVAKDVATNNRNDSENIKPKDREHEFVLVNPKDADSTSKSHLQEVLQMYMTELPGMNYAANTGKLSKFLERCVTNGKYRTLLLKSDSVGKSEKVIAAITYQIVPADTEYAEIPLAAVRAIYQRKGLGHLLFLELRKRLHNVGIRSIFCWGDKESEGFWLKQGFISIAEVDTKGRARRLPIKADIRKALCFPGGSTLMVCHLRMEFLADAANSRKCLPSQLHQNSLTSANAENDELPFTGQLHIDLNFSNKSTDRTDNTENGHSGASVKDRFSREYDRLSDGNTLATGAAHSNNGIDTEMKDCSNFTNGAKRTWEASLSSLKSKRVKGSHLVDCRSDSSWDFVSEADRTNSCFVGCLLDASRGKSSVELPCGDSLIFRENITEKLEGDCLYSEALINNELPSTKQCFRIMLMNIADDAKKTHLTKVIEDLGGTVTSEGRMTTHVVTGKVRKTLNFCTALCSGAWVVSSDWLKESFREGKFVDEMSYILNDKDYPVKYRSDLKTSVLRAKANPQALFKGYNVCIAAHVQPPAKTLSAIVTSAGGNVICGFEKVKEASSTIFVTCEEDMEEAMVAAKKGIRTFSSEWFMNCVMRQELDMEASQFADSEADVCHEVKLNHMGGERYLVDWGEKALANLFNTSDKSHKFRPWREGGGEELGW 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2396 703 MobiDBLite consensus disorder prediction 294 315 - -
Dere01g2396 703 CDD NAT_SF 138 195 - -
Dere01g2396 703 ProSiteProfiles BRCT domain profile. 556 640 IPR001357 -
Dere01g2396 703 Gene3D - 69 224 - -
Dere01g2396 703 SUPERFAMILY BRCT domain 453 537 IPR036420 -
Dere01g2396 703 Gene3D BRCT domain 558 653 IPR036420 -
Dere01g2396 703 Pfam Acetyltransferase (GNAT) family 136 209 IPR000182 GO:0016747
Dere01g2396 703 CDD BRCT_PAXIP1_rpt6_like 560 641 - -
Dere01g2396 703 MobiDBLite consensus disorder prediction 294 311 - -
Dere01g2396 703 Gene3D BRCT domain 442 557 IPR036420 -
Dere01g2396 703 ProSiteProfiles BRCT domain profile. 454 533 IPR001357 -
Dere01g2396 703 PANTHER PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN 63 232 - -
Dere01g2396 703 Pfam Regulator of Ty1 transposition protein 107 BRCT domain 452 533 IPR001357 -
Dere01g2396 703 SUPERFAMILY BRCT domain 555 640 IPR036420 -
Dere01g2396 703 SMART BRCT_7 446 523 IPR001357 -
Dere01g2396 703 SMART BRCT_7 558 638 IPR001357 -
Dere01g2396 703 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 87 216 IPR016181 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Dere01g2396 RTT107_BRCT_5 2.5e-07 CL0459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2396 01 38318839 38328845 Dere01g2396 01 38318839 38328845 ECH