Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2375 ATGCTAGCATCGTCACCCCCTGCGTTCTCAACCATGGGATGGCCCTTCTTGGAGGAGCCCATAAATCAGAAGGACACAGAGACCTCGGAGTATTCATTTCCTGGTCACGAGGTAAAGGAAGATAGGGGTCTAGCATCCCCTACGAATAACAAATCCAATAATGTGAACATCATGAAGAAGCTTAACCACAATGCTAGTGAACGTGATCGCCGAAGGAAGATCAATGGCCTCTATTCCTCCCTTCGCTCCCTCCTTCCTATCCCTCAACATCAAATGAAAAAGATAAGCATTCCCTCGACAATTTCATTAGTGGTGAAATACGTACCAGAGTTACAGCAGGAAGTGGAAGGACTTAGAGAGAAGAAGGAGGAGATCTTGTCGAGAATTTCTCATGGGGCAGCAGCCAACAAAGAATCTCAAAGGAAAATGAATGCCCATCGTCGTCTTCACAACTCTGGTTGTGTACTATCCACGAGCAGGCTCAATGATAGTGAAGCTGTTATTCAGGTTTCCTCTTATAAGCTCCACAAAATTCCACTATCTGAGATCTTGCAGTGCTTGGAACAAGATTACAACCTTTTACTGCTAAATGCTTCTTCCTTCGAGACCTTTGGAGGGAGAGTCTTCCACCACTTGCATTTCCAGGCTTGGCCTCGCGTCTACGATGGTGCTCATGAATTTCTTGTCATCGGCTGGGCAAGGAAATTTTGGGCTACAGAATTGGGCTCAAGTTCGAACATGACTTTGTTTTTGTGA 756 0.455 MLASSPPAFSTMGWPFLEEPINQKDTETSEYSFPGHEVKEDRGLASPTNNKSNNVNIMKKLNHNASERDRRRKINGLYSSLRSLLPIPQHQMKKISIPSTISLVVKYVPELQQEVEGLREKKEEILSRISHGAAANKESQRKMNAHRRLHNSGCVLSTSRLNDSEAVIQVSSYKLHKIPLSEILQCLEQDYNLLLLNASSFETFGGRVFHHLHFQAWPRVYDGAHEFLVIGWARKFWATELGSSSNMTLFL 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2375 251 CDD bHLH_AtORG2_like 59 132 - -
Dere01g2375 251 SMART finulus 64 117 IPR011598 GO:0046983
Dere01g2375 251 FunFam Transcription factor ORG2 54 142 - -
Dere01g2375 251 Coils Coil 108 128 - -
Dere01g2375 251 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 58 111 IPR011598 GO:0046983
Dere01g2375 251 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 49 124 IPR036638 GO:0046983
Dere01g2375 251 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 54 220 - -
Dere01g2375 251 Pfam Helix-loop-helix DNA-binding domain 59 112 IPR011598 GO:0046983
Dere01g2375 251 Gene3D - 50 148 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2375 Dere-ChrDere01 38055868 38057192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2375 1 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G56970 38.333 1.81e-41 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g2375 HLH 2.2e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2375 01 38055868 38057192 Dere01g2375 01 38055868 38057192 ECH