Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2352 ATGTCTTTGGAGGACTCTCTAAGATCTCTGTCTCTGGACTACCTCAACCTGCTCATCAACGGTCAGACCTTCAGCGACGTCACTTTCAGTGTGGAGGGTCGCCTAGTCCACGCGCACCGCTGCATCCTGGCGGCCCGAAGCCTGTTCTTCAGGAAATACTTCTGCGGCCAAGACCCACCATCCCCATCCGGGCTGGACCCCGTCACTGGCTCACGGGTCAACTCGGCCACCTCCACCTCGAGACCGGGGGTCATTCCGGTGAACTCCGTGGGCTATGAGGTGTTCCTGCTTCTGCTTCAGTTCTTGTACAGTGGTCAAGTCTCTATTGTGCCTCAGAAGCACGAGCCCAGGCCTAATTGCGGCGAGAGAGGCTGCTGGCATACGCATTGCACCTCTGCCGTTGATCTCGCCCTCGAAACTCTGGCAGCTGCTAGATCCTTTGGCGTTGAACAGCTCGCATTGCTCACTCAGAAACAATTAGCGAGCATGGTAGAGAAGGTCTCCATTGAAGATGTAATGAAAGTGCTTCTAGCTTCAAGAAAGCAAGACATGCATGAATTGTGGACCACTTGTTCCCACCTCGTTGCCAAGTCCGGTCTACCCCCTGAAGTCCTCGCAAAACACCTTCCCATCGATGTTGTCGCTAAAATCGAAGAGCTTCGTCTCAAAACCTCCCTGGCTCGCCGCTCTTTAATCCCCTCTCACCACCCCCACCACCACCACGACCATCTTGGCGCCACTGCCGACCTCGAGGACCAGAAAATCCGCCGAATGAGAAGGGCACTTGACTCCTCCGATGTCGAACTCGTGAAGCTCATGGTCATGGGAGAAGGTCTAAATCTAGATGAAGCATTGGCCCTACACTATGCCGTAGAGAATTGCAGCCGAGAAGTCGTTAAGGCCTTGCTCGAGCTGGGTGCAGCCGATGTTAACTACCCCGCAGGACCCGCCGGCAAGACCCCACTTCACCTTGCGGCTGAGATGGTGTCACCGGACATGGTAGCGGTCCTCCTCGACCACCACGCTGACCCGAACGTCCGGACCGTGGATGGGGTGACCCCTCTGGACATCCTTAGAACCCTAACTTCTGATTTTCTGTTCAAAGGAGCCGTCCCTGGGCTCACACATATTGAACCCAACAAATTGAGGTTGTGCTTAGAGCTGGTTCAATCCGCAGCCCTTGTGCTGTCACGCGAGGAAGGCAATGCAAATCCTCCTTCTTCAACCGCCATATATCCCCCAGTGAGCGAAGGCCATCACCATAACAGCAGTGGTAGCAACAATATCGGGAACCTTAATTTGGATGCAAGGATGGTTTACCTGAATCTAGGCGCAACAACGTCGTCTGGACCAAGGGGTTCAAGATTGGACGGAGACGACGATAGCAGCCACAATAGCCAGAGCCGTCATGGGTCTCAAGGTGGATCATGTGACCCAACAATGTACCACCACTCTCATGACTTTAATTAA 1470 0.5422 MSLEDSLRSLSLDYLNLLINGQTFSDVTFSVEGRLVHAHRCILAARSLFFRKYFCGQDPPSPSGLDPVTGSRVNSATSTSRPGVIPVNSVGYEVFLLLLQFLYSGQVSIVPQKHEPRPNCGERGCWHTHCTSAVDLALETLAAARSFGVEQLALLTQKQLASMVEKVSIEDVMKVLLASRKQDMHELWTTCSHLVAKSGLPPEVLAKHLPIDVVAKIEELRLKTSLARRSLIPSHHPHHHHDHLGATADLEDQKIRRMRRALDSSDVELVKLMVMGEGLNLDEALALHYAVENCSREVVKALLELGAADVNYPAGPAGKTPLHLAAEMVSPDMVAVLLDHHADPNVRTVDGVTPLDILRTLTSDFLFKGAVPGLTHIEPNKLRLCLELVQSAALVLSREEGNANPPSSTAIYPPVSEGHHHNSSGSNNIGNLNLDARMVYLNLGATTSSGPRGSRLDGDDDSSHNSQSRHGSQGGSCDPTMYHHSHDFN 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2352 489 SMART ANK_2a 317 346 IPR002110 GO:0005515
Dere01g2352 489 SMART ANK_2a 282 312 IPR002110 GO:0005515
Dere01g2352 489 FunFam regulatory protein NPR5 isoform X1 4 197 - -
Dere01g2352 489 PANTHER BTB/POZ DOMAIN AND ANKYRIN REPEAT-CONTAINING PROTEIN NH5.2 1 488 IPR044284 GO:0099402
Dere01g2352 489 FunFam regulatory protein NPR5 isoform X2 248 365 - -
Dere01g2352 489 Gene3D - 249 365 IPR036770 -
Dere01g2352 489 SMART BTB_4 25 164 IPR000210 GO:0005515
Dere01g2352 489 ProSiteProfiles Ankyrin repeat profile. 317 349 IPR002110 GO:0005515
Dere01g2352 489 MobiDBLite consensus disorder prediction 445 489 - -
Dere01g2352 489 SUPERFAMILY POZ domain 9 194 IPR011333 -
Dere01g2352 489 Pfam Domain of unknown function (DUF3420) 199 259 IPR024228 -
Dere01g2352 489 Gene3D Potassium Channel Kv1.1; Chain A 4 197 IPR011333 -
Dere01g2352 489 Pfam BTB/POZ domain 16 112 IPR000210 GO:0005515
Dere01g2352 489 ProSiteProfiles Ankyrin repeat region circular profile. 317 347 - -
Dere01g2352 489 MobiDBLite consensus disorder prediction 399 429 - -
Dere01g2352 489 CDD BTB_POZ_NPR_plant 8 164 - -
Dere01g2352 489 Pfam Ankyrin repeats (3 copies) 265 347 IPR002110 GO:0005515
Dere01g2352 489 ProSiteProfiles BTB domain profile. 25 111 IPR000210 GO:0005515
Dere01g2352 489 SUPERFAMILY Ankyrin repeat 276 360 IPR036770 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2352 Dere-ChrDere01 37847923 37850234 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Dere01g2352 BTB 8.7e-15 CL0033
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2352 01 37847923 37850234 Dere02g1492 02 14587878 14590982 CCT
Dere01g2352 01 37847923 37850234 Dere01g2352 01 37847923 37850234 ECH