Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2334 ATGGAGAACTCTGAGCTCTACCAATTCCTCGCCGGCAACGCCTCCTTCTTCACCCCTTCACCGTACGGTCTGCCTCCTGCTCCTGCAGCCACCACGATGCAGAGCTTCTGCAGCTCCTCTTATTACCCCTTGGATTCTTCCGAAATTACCGATACACCCCAGCAAGATAGAGCCCTCACCGCTTTGAAGAATCACAAGGAGGCTGAGAAGCGTAGGAGGGAGAGGATCAATTCCCATCTCGATAAGCTTCGCACTCTTCTTCCCTGTAATTCTAAGACAGACAAGGCCTCACTTCTTGCAAAGGTTGTCCAACGAGTGAGAGAGCTGAAACAGCAAACTTCAGAAATCACGGAACTTGAAACCATTCCTTCAGAGACCGACGAGATCACCGTCCTGTCCACCAGCGGCGACTACACAGGCGACGGCAGGCTCATATTCAAAGCCTCCCTATGCTGCGAAGATCGCTCCGACCTCATCCCAGACCTCATCGAAATCCTGAAGTCCCTGCATCTCAAAACACTCAAAGCAGAAATGGCAACACTAGGAGGAAGAACCCGGAACGTTCTTATTGTGGCCGCCGATAAAGACCACAGCATCGAATCAATCCACTTCCTTCAGAACGCACTGAAATCTTTGGTAGAACGCTCAAATTCTAGCGAAAGATCCAAGCGGCGTCGTGTATTGGACCGCAAGTTGATTGTTTAA 705 0.5064 MENSELYQFLAGNASFFTPSPYGLPPAPAATTMQSFCSSSYYPLDSSEITDTPQQDRALTALKNHKEAEKRRRERINSHLDKLRTLLPCNSKTDKASLLAKVVQRVRELKQQTSEITELETIPSETDEITVLSTSGDYTGDGRLIFKASLCCEDRSDLIPDLIEILKSLHLKTLKAEMATLGGRTRNVLIVAADKDHSIESIHFLQNALKSLVERSNSSERSKRRRVLDRKLIV 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2334 234 Pfam Helix-loop-helix DNA-binding domain 64 109 IPR011598 GO:0046983
Dere01g2334 234 CDD bHLH_AtAIG1_like 55 131 - -
Dere01g2334 234 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 60 109 IPR011598 GO:0046983
Dere01g2334 234 FunFam transcription factor bHLH30 55 118 - -
Dere01g2334 234 PANTHER TRANSCRIPTION FACTOR BHLH30 48 229 IPR045847 GO:0003700|GO:0006355
Dere01g2334 234 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 64 120 IPR036638 GO:0046983
Dere01g2334 234 SMART finulus 66 115 IPR011598 GO:0046983
Dere01g2334 234 Gene3D - 55 122 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2334 Dere-ChrDere01 37651003 37652530 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2334 6 219 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G41130 65.487 6.56e-90 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dere01g2334 HLH 2e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2334 01 37651003 37652530 Dere01g2334 01 37651003 37652530 ECH