Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2315 ATGAAGTCCGGCTCATTAGATTACTGGAGGAGTTACTTTCGGACTGCGAATTCGGATATTTTCGATATAATCGACCATGCGATCATGGTGGCCGCTTCTGATTGTCCGAAGGAGTTTCGATTGAGAAGAGATGGAATCGCGGAACGCTTGTTTTCTTGTAGGATGACTCGTTGTTTGGGGTGCGACCGAGTAGAGTTGGCGGTGTCCGGTGTTGATGAGGATGAAGACGGAGGCTGTAAGAGTGGTTTTGACAGAGATGCAGCTGAAGTGGAAGCAGGTGCGAGTAAAGAGAGCAAGGCCCATAGTAGCCGAGACGACCATGGAGAGATGAACACGAACCACGTTAGCCATTATAGCTATGGAGAAGCTGAAGCATTGACGGATGAGATTGAAGAAGGGTCTCAATTTGTTGGTGAGATTTTGAGGATCAAAGAGATTCTTCATAACAGCGAAGAAGAGTCTGAGTCGGTGTTGTTTGAGTCGTTGAGGAGGCTCCAGCTGATGGAACTGACTGTGGATCTTCTGAAGACAACTGAGATTGGAAAGTCTGTCAATCCTTTCCGAAAGCATGGAACAAAGGAGATTCGTCAACTTGCACGGACTCTAATTGATGGCTGGAAAGAAATGGTAGACGAGTGGGTCAATGCTACTACAATCGTTGCAGAAGGTACACCGGATTCAGTAAATCCATCTGTCCTTGATGAGGAGGAAGAGGAAGGGCTCCCATCACCTCCTATGGATGAAGGGGCTTTTTTTGCAGCCCAAACTGCTACAATGGAACTATCACAGTTCTTCGATGGCATGGATGATGATGGAAATCCTCCACAGAGTGGGGAATTCATCAAGAACCGGGAAAATGGCAGAAGACCATCCCTGGACTGTCAAAACATTGTAAAGAGGAAACAACAGGCTTCCAACGGGGCAAACGCCACTGCCAAAGACAGCAAGAATCAGCAAGCAAAGAAAAATGAGGCTGTTGTGAAGCCCAATAAATCAGTAACTGCTCTCTCTGGTCCTGGCAGACCATTAAAATCAAGCATGCAGCAAAGAGGGAATATGGAGCCAAAGATGCAGCAAAAAATGGACAAGAGTGGTATCCCTCGGAGGCCTATTGTTGGTCAGCAAGATAAATCCAAGTGTTCAGATGATGCTTCAGTCCAAATGAAGTTAGAAGCCACTAAGAGGAAACTTCAGGAGAGTTATCAACAAGCTGAAAATGCCAAGAAGCAGCGGACTATACAGGTTATGGAGTTGCATGATCTCCCCAAGCAAGGGATTAGCCACCGAAATACTCATTTCAAACCTGTGAAGAACCATAACAGGAACTGGGCACAGGGACGAAGGTAG 1347 0.4647 MKSGSLDYWRSYFRTANSDIFDIIDHAIMVAASDCPKEFRLRRDGIAERLFSCRMTRCLGCDRVELAVSGVDEDEDGGCKSGFDRDAAEVEAGASKESKAHSSRDDHGEMNTNHVSHYSYGEAEALTDEIEEGSQFVGEILRIKEILHNSEEESESVLFESLRRLQLMELTVDLLKTTEIGKSVNPFRKHGTKEIRQLARTLIDGWKEMVDEWVNATTIVAEGTPDSVNPSVLDEEEEEGLPSPPMDEGAFFAAQTATMELSQFFDGMDDDGNPPQSGEFIKNRENGRRPSLDCQNIVKRKQQASNGANATAKDSKNQQAKKNEAVVKPNKSVTALSGPGRPLKSSMQQRGNMEPKMQQKMDKSGIPRRPIVGQQDKSKCSDDASVQMKLEATKRKLQESYQQAENAKKQRTIQVMELHDLPKQGISHRNTHFKPVKNHNRNWAQGRR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2315 448 MobiDBLite consensus disorder prediction 430 448 - -
Dere01g2315 448 Pfam TFIIS helical bundle-like domain 162 210 IPR017923 -
Dere01g2315 448 CDD TFIIS_I 139 211 - -
Dere01g2315 448 MobiDBLite consensus disorder prediction 296 316 - -
Dere01g2315 448 MobiDBLite consensus disorder prediction 339 355 - -
Dere01g2315 448 MobiDBLite consensus disorder prediction 90 112 - -
Dere01g2315 448 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 26A-RELATED 3 435 IPR044805 -
Dere01g2315 448 MobiDBLite consensus disorder prediction 264 383 - -
Dere01g2315 448 MobiDBLite consensus disorder prediction 421 448 - -
Dere01g2315 448 MobiDBLite consensus disorder prediction 224 245 - -
Dere01g2315 448 ProSiteProfiles TFIIS N-terminal domain profile. 138 213 IPR017923 -
Dere01g2315 448 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 136 217 IPR035441 -
Dere01g2315 448 SMART TFS2_5 137 212 IPR003617 GO:0005634
Dere01g2315 448 Coils Coil 387 414 - -
Dere01g2315 448 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 130 221 IPR035441 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2315 Dere-ChrDere01 37437508 37440196 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Dere01g2315 Med26 1.1e-11 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2315 01 37437508 37440196 Dere01g2315 01 37437508 37440196 ECH