Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2309 ATGAGGGAGGAGGAGTCGAATTGGTTTTCGCGATGGGAAGAGGAACTCCCTTCTCCGGAGGAGCTCATGCCCCTCTCCCAAACCCTAATCACTCCCGATCTTGCTATGGCTTTCGATATCCGAAACCCCCATCTCAATACCCCACAACAACTCCCTCAACCCCCTCCTCCTTCAAATCCTTTGCCCTCTCCTGGGAATCCTACCCACCCCAACTCTGCGGAATTTGCTGATTCCGCTGAATTGGGATCAGGTACTGGTGGTGAGGAACCCGCTCGCACCCTGAAGCGGCCTCGCCTTGTTTGGACTCCGCAACTTCACAAGAGGTTTGTGGATGCTGTGGCACACCTAGGGATAAAGAATGCTGTGCCCAAGACTATAATGCAGCTGATGAGTGTGGATGGGTTGACCAGGGAAAACGTGGCTAGCCATTTACAGAAATACCGGCTTTATCTGAAGCGAATGCAAGGGCTATCCGGCGGCGGTAGCGGTGGCGGCAGTGGTGGCGGAGGAGGAGGTGCAGGTGGATTGGCTGCTTCCGCTGATCCTGCCACCGACCATTTGTTTGCTAGCTCGCCCGTACCACCCCATTTCTTGCATCCAACTAGGCCTAATTCGGACCATTTCTTGCCGTTTGTGCCGGTCCCAGCTCTGCAGCACCACCATCACCAGCAGCATATGGCAGCGGCTGCAGCTGCTGCCGCCCATCCGCAATTGCAGCCACAGTATCACAGACAGGTGGGGCATTTTGGGTCACCACCAAACGGACACTTTGAGCATCCCTTTCTAACAAGGCAGTCTCAGGCTCAGCCGCTTCATAGGATGGGGGCACCAATTCACAATCCAACAAATGCTAATTATGTGGAGGACATGGAATCAGCTAACGCGGCAGGAGCGAGAAAGGTTCTTACTTTATTCCCAGCTGGGGATGATTGA 933 0.5445 MREEESNWFSRWEEELPSPEELMPLSQTLITPDLAMAFDIRNPHLNTPQQLPQPPPPSNPLPSPGNPTHPNSAEFADSAELGSGTGGEEPARTLKRPRLVWTPQLHKRFVDAVAHLGIKNAVPKTIMQLMSVDGLTRENVASHLQKYRLYLKRMQGLSGGGSGGGSGGGGGGAGGLAASADPATDHLFASSPVPPHFLHPTRPNSDHFLPFVPVPALQHHHHQQHMAAAAAAAAHPQLQPQYHRQVGHFGSPPNGHFEHPFLTRQSQAQPLHRMGAPIHNPTNANYVEDMESANAAGARKVLTLFPAGDD 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2309 310 Pfam Myb-like DNA-binding domain 100 148 IPR001005 -
Dere01g2309 310 NCBIfam myb-like DNA-binding domain, SHAQKYF class 97 149 IPR006447 GO:0003677
Dere01g2309 310 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 3 279 IPR044841 GO:0003700|GO:0006355
Dere01g2309 310 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 101 152 IPR017930 -
Dere01g2309 310 Gene3D - 93 155 - -
Dere01g2309 310 MobiDBLite consensus disorder prediction 1 18 - -
Dere01g2309 310 FunFam Two-component response regulator 92 155 - -
Dere01g2309 310 MobiDBLite consensus disorder prediction 48 67 - -
Dere01g2309 310 MobiDBLite consensus disorder prediction 1 94 - -
Dere01g2309 310 SUPERFAMILY Homeodomain-like 93 153 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2309 Dere-ChrDere01 37376290 37377222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2309 1 310 G2-like Transcription Factor Family AT3G10760 58.127 5.25e-101 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere01g2309 Myb_DNA-binding 2.3e-08 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2309 01 37376290 37377222 Dere01g2309 01 37376290 37377222 ECH