Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2299 ATGGGGTTAGAGATTTTGGTGCCGAACACGTGCATTCGGGGCTGCTGTAGCAGCTTATATATTCCTCTGCATCTTCCTCCTTCCTCCTATACTCTTTTATCACCAATTGCCCGAGGGGCGGAAAGTGTTGTTTACGAAGGGACATTGGATGGTAACAAGGTTGCTGTGAAGAAACCTATCTTGTCGACTTCAGAAGACATTAATAAGTTCCATAAAGAATTACAATTGTTATGCAAGCTAGATCACCCGGGACTAGCAACGCTAATTGCTGCCCATGCAAAGCCGCCCGATTACCTCCTTTTCTTCAAATTCTATAAATCTTCCAACCTTGCACAAAAGTTACACTTGGAGGAATGGACCCCAAGTATCAATCACGCACTTATGATAACAATTCAGTTAGCCAAAGCTTTGCAATATCTTCATAACCTCGGGATTGTACATAGAGATGTGAAACCAGCAAACATTCTACTTGACAAAAAACTTTATCCGCACCTCACAGATTTTGGTTTGGCCGAATACAAGAATGATCTTAAGAGAGTTTCTCTTGAGAGTTGGAAGTCTTCTGGCAAGCCTACTGGTGGTTTTCATAAAAAAAATATGGTTGGAACTCTAATTTACATGGCACCTGAAATATTAAGAAAGGAGTTGCACACAGAAAAATCAGATGTCTACAGCTTTGGGGTGACAATCAATGAACTCCTGACAGGTGTTGTACCATATACTGATCTTCGTGCAGAAGCACAGGCCCACACAGTACTGGAGATGAATTATACTGAACAGCAACTGACAGCAGCTGTTGTTTCTGATGCATTACGGCCGATCCTTGCTGCTCAGGAGCTGGGTGTACCTTCAAGATTATTATCACTAATACAGAGATGCTGGGATGCAAAACCTGAAAATAGACCTTCCTTTGATGATATTGTTAAGGAGCTTGATTCCATTATTGAGCACAGAAAGGACGTTCAAGATGGATACATCAGACATTGTAAATTGCATGATGATCAGGTTGTGGCTGAGACCAATCCCCTTCAAGCTTATCCAGAGAGTATTAACTGGTCCACTCAAGGAGAACTTTTCTCAAGGAGATCCTCTTGTGCAACTGCTTCTGATTTGAGAACCTGGCATGAGTCTTTTGATGAGCCTTTGGCTCACTGTCCAAGACTTTCCTGGGGATCTTTTTCTACCTGTGGAAGAAGGGAGACCATGGAGGACACACATTTCATTCTGCCCAGTATGTGCAATGAAAAGGACATCCTTGCTTTTGGTATCTTCGATGGTCATAGAGGCGCAGCTGCTGCTCAGTTTTCTGCTCAAGCGGTGCCAGGGTTCCTGCAAACTTTAGGTTCTATGGGAAGTCCTGCTAGTGCACTCGTTGAAGCATTCCTTAGAACAGATGTTGCCTTTAGAAAAGAGCTTGACTCCTGTCGTAAATCCAAGAGAGTTACCCAGAAGGATTGGCATCCTGGTTGTACAGCAGTTGTTGCTCTTGTAATCAGAAACAAGCTTTTTGTTGCTAACAGTGGTGATTGCAGGACAATCTTATGCCGAGCTGGTAATCCCATTGCTCTAAGTAAGGATCATGTTGCAAGCTGCATTGAAGAGAGAGAACGTGTTGTTCGTGATGGAGGGAAAGTCCACTGGCAAGTTGATACCTGGAGGGTTGGTCTTCCAGCACTTCAGGTTACTCGTTCAATTGGGGATGACGATCTGAAGCCTGCTGTCACTGCAGAACCTGAGATAACTGAAACTACCCTATCTGCAGAAGATGAATATTTGGTAATGGCGAGTGATGGACTGTGGGATGTGATGAGCAATAGAGAGGTGATAAACATAATCAAAGACACTGTGAAAGAGCCAGGAATGTGCTCTAAGAGGTTGGCTACTGAAGCAGTGGAACGGGGTAGCAAAGATAACATTACAGTCATTGTTGTTTTCTTGCGTCCTGTATCTACCGCAGAGAGGATTTATTAA 1971 0.4348 MGLEILVPNTCIRGCCSSLYIPLHLPPSSYTLLSPIARGAESVVYEGTLDGNKVAVKKPILSTSEDINKFHKELQLLCKLDHPGLATLIAAHAKPPDYLLFFKFYKSSNLAQKLHLEEWTPSINHALMITIQLAKALQYLHNLGIVHRDVKPANILLDKKLYPHLTDFGLAEYKNDLKRVSLESWKSSGKPTGGFHKKNMVGTLIYMAPEILRKELHTEKSDVYSFGVTINELLTGVVPYTDLRAEAQAHTVLEMNYTEQQLTAAVVSDALRPILAAQELGVPSRLLSLIQRCWDAKPENRPSFDDIVKELDSIIEHRKDVQDGYIRHCKLHDDQVVAETNPLQAYPESINWSTQGELFSRRSSCATASDLRTWHESFDEPLAHCPRLSWGSFSTCGRRETMEDTHFILPSMCNEKDILAFGIFDGHRGAAAAQFSAQAVPGFLQTLGSMGSPASALVEAFLRTDVAFRKELDSCRKSKRVTQKDWHPGCTAVVALVIRNKLFVANSGDCRTILCRAGNPIALSKDHVASCIEERERVVRDGGKVHWQVDTWRVGLPALQVTRSIGDDDLKPAVTAEPEITETTLSAEDEYLVMASDGLWDVMSNREVINIIKDTVKEPGMCSKRLATEAVERGSKDNITVIVVFLRPVSTAERIY 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2299 656 SMART serkin_6 30 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2299 656 ProSiteProfiles Protein kinase domain profile. 30 315 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2299 656 Gene3D Transferase(Phosphotransferase) domain 1 22 340 - -
Dere01g2299 656 Pfam Protein kinase domain 30 309 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2299 656 Pfam Protein phosphatase 2C 393 639 IPR001932 -
Dere01g2299 656 FunFam Leucine rich repeat protein phosphatase 2c domain containing protein 381 650 - -
Dere01g2299 656 SUPERFAMILY Protein kinase-like (PK-like) 21 322 IPR011009 -
Dere01g2299 656 FunFam Protein kinase and PP2C-like domain-containing protein 20 343 - -
Dere01g2299 656 ProSitePatterns Serine/Threonine protein kinases active-site signature. 145 157 IPR008271 GO:0004672|GO:0006468
Dere01g2299 656 ProSiteProfiles PPM-type phosphatase domain profile. 389 646 IPR001932 -
Dere01g2299 656 SMART PP2C_SIG_2 404 646 IPR001932 -
Dere01g2299 656 SMART PP2C_4 379 644 IPR001932 -
Dere01g2299 656 SUPERFAMILY PP2C-like 383 648 IPR036457 -
Dere01g2299 656 Gene3D - 384 651 IPR036457 -
Dere01g2299 656 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 24 318 - -
Dere01g2299 656 CDD PP2Cc 391 646 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2299 Dere-ChrDere01 37212597 37217694 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2299 99 656 PP2C-type Phosphatase Gene Family AT2G40860 66.488 0.0 788
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-3 Dere01g2299 Pkinase 8.4e-46 CL0016