Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2298 ATGGGAAGTGTTTCCCAAGAATTTTCCTCACCTCAAAGACCAGGCGAACTCTATCTTTTTCCTTTAATCACCTTACCATGCGAAGCACATGCGTTCCACTTGGTCCAAGGTATATTTCCTTCCATGGAAGATGCAGTATTGATTAGTCTCGTTATAAATACCCCTTTCTTCTCTTGCAAGACCCACACAAACACTTTCACATTCTTTGGTGAATTAACCTCAGTAGTAATGTCTGATAGAGTGTGCGTGGGCGATGCAGAGCACAGAAAGCTCAAGCGCCAGATGATTGAGGAGTCGTCAGAGCCACCCGCCATGGACGCCAAGTCAGAGGAGCTTCTCACTCTGAAGCTAATGGTGGGTGAAGCCCCTTCATCCAAGAAGGCCTCTGATAATGAAGAAGAGAGAGCAGTCACGGTGCGCGAATTCTCCTGCAAATTTTGCAGCAAGAGGTTCCGTAGCTCTCAAGCTCTGGGTGGACACCAGAATGCTCATAGGCGCGAGCGAGCTCTCTCCAAAATAGAGAAAGAGCTCGACATGGGCACTTTTGCACGCTTTGGCCCTCACCTTTGCCCGTGTTCAGCCATGGAAAGTACTCTTCCCTTCCGTGGGTCACCTTTTCATGGAGGGGCTCATAGTCACATGCACCCACCGGCTCACATGTGTTGGCCTCTTTATGGCCAGCAAGGGCTAGCCAACTCGGACCTGGAGGCGTACCGGTTCGGCATGAGGAGATCTTGGGGTGCAGGAGGAGAAGGGGTTCATGTTCAACGCAGATTATTGAATCGTAGAAACAATGTTCAGAGTTCTTCATATGCAGATGCGAACCCAGAGGGATCAGAGGGTGCTCGTGCTAGTATTGGAGGCCTTCAGAGTAATTCATATATGGGAAACCTGAATAATTCATCATCAGACCCTGACTTGTCCCTCAGTCTTTAA 936 0.4915 MGSVSQEFSSPQRPGELYLFPLITLPCEAHAFHLVQGIFPSMEDAVLISLVINTPFFSCKTHTNTFTFFGELTSVVMSDRVCVGDAEHRKLKRQMIEESSEPPAMDAKSEELLTLKLMVGEAPSSKKASDNEEERAVTVREFSCKFCSKRFRSSQALGGHQNAHRRERALSKIEKELDMGTFARFGPHLCPCSAMESTLPFRGSPFHGGAHSHMHPPAHMCWPLYGQQGLANSDLEAYRFGMRRSWGAGGEGVHVQRRLLNRRNNVQSSSYADANPEGSEGARASIGGLQSNSYMGNLNNSSSDPDLSLSL 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2298 311 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 104 311 IPR044246 GO:0009788
Dere01g2298 311 Gene3D Classic Zinc Finger 125 181 - -
Dere01g2298 311 MobiDBLite consensus disorder prediction 266 311 - -
Dere01g2298 311 ProSiteProfiles Zinc finger C2H2 type domain profile. 142 169 IPR013087 -
Dere01g2298 311 MobiDBLite consensus disorder prediction 285 311 - -
Dere01g2298 311 ProSitePatterns Zinc finger C2H2 type domain signature. 144 164 IPR013087 -
Dere01g2298 311 Pfam C2H2-type zinc finger 142 167 - -
Dere01g2298 311 SUPERFAMILY beta-beta-alpha zinc fingers 140 169 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2298 Dere-ChrDere01 37207038 37207973 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2298 140 199 C2H2 Transcription Factor Family AT1G24625 50.000 4.89e-11 59.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dere01g2298 zf-C2H2_6 3.1e-06 CL0361