Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2291 ATGTCAAATAGCAGAAACACTCATTGGTGTTATAGTTGCAGGAGGCCAGTTCAGCTGCAGGGGCGAGATGTGGTGTGCCCTAACTGTAGTGAGGGATTTATTCAAGAACTTAATGATATGGTCATCAACCCACTAGAATTCTTTGGACTGGACAATGGTGAAGAACGTGACCGAAGATTCAGACTTATGGAAGCGTTCTCTGCCTTTATGAGGCATCGACCTGTAAATAGAAGCCATAGGCATGATATCATAGTCGGTTCAGATTCAATTCCTGAACATAGTCCAGGATATGCTCCTTTGCTGCTCTTTGGCGGCCAGATTCCATTCAGATTGTCTGGACATGGTGGCTTTGAAGCTCTTTTCAACGGGACTCCTGGAATTGGTCTGGTTCAAGGAAATACGGGTGATTATTTTATTGGTCCTGGACTGGAAGAACTGTTTGAACAGCTTTCAGCTAATGATCGGCGAGGTCCTCCACCGGCATCCAGGTCCTCAATAGACGCAATGCCTACTATTAAGATCACACATAGGCTTCTTCGTTCAGATTCACATTGTCCAGTATGCCAAGATAAATTTGAACTGGGGTCTGAAGCTAGGCAAATGCCATGTAAACATATATATCACTCAGATTGTATTGTTCCATGGTTGGTTCAGCATAACTCCTGCCCTGTTTGCCGCCAGGAGTTGCCCCCCCAAGGATTGAGTAGCAACCGTGGCTCTAATGGTCGAAGTAGAAGCAGCTCTGGTAGTAATGCCAATGCAAGGGTAAATGGTAGGGAGAACCAGGGAAGGCGGAATCCATTCTCTTATTTTTGGCCTTTCCGTTCATCTAATTCTAGTAATAATGGAGCAGGGGAAAGCAGCTCACCAACACAGTCTATCCCTGAGAATAGCCACCACACGGAGTATTCCGGGTGGCGATATGAGTGA 930 0.4591 MSNSRNTHWCYSCRRPVQLQGRDVVCPNCSEGFIQELNDMVINPLEFFGLDNGEERDRRFRLMEAFSAFMRHRPVNRSHRHDIIVGSDSIPEHSPGYAPLLLFGGQIPFRLSGHGGFEALFNGTPGIGLVQGNTGDYFIGPGLEELFEQLSANDRRGPPPASRSSIDAMPTIKITHRLLRSDSHCPVCQDKFELGSEARQMPCKHIYHSDCIVPWLVQHNSCPVCRQELPPQGLSSNRGSNGRSRSSSGSNANARVNGRENQGRRNPFSYFWPFRSSNSSNNGAGESSSPTQSIPENSHHTEYSGWRYE 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2291 309 MobiDBLite consensus disorder prediction 271 300 - -
Dere01g2291 309 MobiDBLite consensus disorder prediction 230 309 - -
Dere01g2291 309 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Dere01g2291 309 CDD RING-H2_RNF126-like 185 226 - -
Dere01g2291 309 FunFam E3 ubiquitin-protein ligase RING1-like 148 232 - -
Dere01g2291 309 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Dere01g2291 309 MobiDBLite consensus disorder prediction 230 264 - -
Dere01g2291 309 Pfam Ring finger domain 184 226 IPR001841 -
Dere01g2291 309 SUPERFAMILY RING/U-box 165 232 - -
Dere01g2291 309 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 81 230 - -
Dere01g2291 309 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 232 IPR013083 -
Dere01g2291 309 SMART ring_2 185 225 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2291 Dere-ChrDere01 37138663 37139592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2291 120 230 C3H Transcription Factor Family AT5G01980 42.609 1.48e-25 104