Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2280 ATGGAGCAAGAACCGCTTCTGCACAGTGGTGATCTAAGCCGTACTCGTGGAAGTAATTCCATTCTCCGCGCCCCCACCATACGCACCACTTTCACCCTCCCCCTAACTCGCTACACCACCCGTCTGATCGCAGCCGAGCACCACCGGATTTTCCTCGGCGACTGTACGGAGAATCCGTCGGAGGACGACGATGACCGGCCAATTGAAGATAGCAGTTGCGCTTATTCGAGGCCCATTTTGGTTCTGGACCTTGTATGGAACCTAGCCTTCGTATTGGTCACTGCTGGTGTCCTTCTTTCGACATTTAGCGAGCGCCCATCCACCCCTTTGAGGCTTTGGCTATGTGGGTATGCTTTTGAGTGTATTCTGCACATGGGTTTTGTGTGTTTTGAGTATCGGCGGAGGAGTCACGATTTTTACGGTGCTGAGCTTGGGCTTTCGTTGTCTCAGAGTTGGAACAGCATTGTGAAGAAGTTAGAGTCCATGAACACGTTGGCATCATCTATTTGGTGGGTCCTTGGATTTTATTGGATTGTGGTGGGTGGCCAACAACTTTTGATAGATTGCCCCCGTGTTTACTGGTTAACAGTGGTCTTTCTGGCCTTTGATGTATTTTTTATCATCTTTTGCATTGGGATGGTATGTATAGTTTTCTTTGCTCTCTTCTTCTTCATCCCAATTGTAGCATTAGCTTATGCTATGAGAATCAAGGAAGGTGCATCAGAAGAGGATATCAGGTCTCTTCCTAAGTATAAGTTTAGTCAGTCAAATTTATTGATGATGGTTGATGACAGTAAGAAGCAAGTTTCTAAAGCAAGAATGGATGCAGGGAATAGCAACCATGTCAGTGAACTATATCTTAACCCAGATGATTCTGAATGCTGCATCTGCCTTTCTTCATACGTAGATGGAGCAGAATTGTATCGCCTTCCCTGCACACACCATTTTCATTGTGGATGCATTAGCAGATGGCTTCGGACAAAAGCAACCTGTCCTCTCTGCAAATTCAATATCCTCAGAGGTGATACACTGGTTGGATTTCGGGTATCATAG 1053 0.4606 MEQEPLLHSGDLSRTRGSNSILRAPTIRTTFTLPLTRYTTRLIAAEHHRIFLGDCTENPSEDDDDRPIEDSSCAYSRPILVLDLVWNLAFVLVTAGVLLSTFSERPSTPLRLWLCGYAFECILHMGFVCFEYRRRSHDFYGAELGLSLSQSWNSIVKKLESMNTLASSIWWVLGFYWIVVGGQQLLIDCPRVYWLTVVFLAFDVFFIIFCIGMVCIVFFALFFFIPIVALAYAMRIKEGASEEDIRSLPKYKFSQSNLLMMVDDSKKQVSKARMDAGNSNHVSELYLNPDDSECCICLSSYVDGAELYRLPCTHHFHCGCISRWLRTKATCPLCKFNILRGDTLVGFRVS 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2280 350 SMART ring_2 294 334 IPR001841 -
Dere01g2280 350 PANTHER TARGET OF ERK KINASE MPK-1 69 339 - -
Dere01g2280 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 267 339 IPR013083 -
Dere01g2280 350 CDD RING-H2_RNF6-like 293 335 - -
Dere01g2280 350 ProSiteProfiles Zinc finger RING-type profile. 294 335 IPR001841 -
Dere01g2280 350 SUPERFAMILY RING/U-box 286 339 - -
Dere01g2280 350 Pfam Ring finger domain 293 335 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2280 Dere-ChrDere01 37009021 37012568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2280 74 342 C3H Transcription Factor Family AT1G68070 46.643 1.53e-88 268