Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2277 ATGATATATGAAGTACTGAGAAGAAAGATTGCGCAAATTGAAGAGGGAAAGGAAGGGAATGTAGGAGTTTCAAAGCGATCTGATTTAAGAGCAGGTACAGTTATGTTGAATAAAGGGATTCGTACTAATAAGGAGAGACGCATCGGAGCTGTGCCTGGTGTTGAAATTGGGGATATTTTCTATTTCAGGATGGAATTGTGCGTGGTGGGATTGCATGCTCCATCTATGGCTGGAATTGATTACATGGGTGTCAAAGTTGGTCAGGAGGAAGAGCCATTAGCTATCAGTATTATATCATCTGAAGGATATGAAGATACTGTTGAGGATGGGGATGTGCTGATTTACAGTGGCCAAGGTGGGGTTAATCGGAGTAAGGAAGCAAGTGATCAAAAGCTTGGGAGGGGCAATCTTGCATTAGAAAAGAGCCTGCATCGAGGTAATGAAGTGAGGGTCACAAGGGGTCTCAAGGAGTTGGCGAATTCAACAGGGAAGGTTTATGTCTATGATGGTCTTTACAAGATCCAGGATTCTTGGATAGAGAAAGGAAAGTCAGGTTTCAATGTGTTTAAGTACAAATTAGTCCGGTTGCCTGGGCAGCCTGAAGGATATACGATATGGAAATCAATTCAGCAGTGGACCGAGAAGTCTACTTCAAGAGCAACGGTTAAATTGCCTGATCTCACTTCTGGGGCAGAAAATTTACCTGTTTGTCTTGTAAATGATTTTGATGATGAGAAAGGCCCTGCATATTTTACTTACTGTCCTACTCTCAGGAATTTGAAGCCTATAAATGCTGTGGAACCATCTACTGGATGTAATTGTGTTGGTGGATGCCTAACTAGCAATTTAAGCTGTCCTTGCATACAAAAGAATGGAGGCTATCTCCCATATTCTACAAATGGGCTAATCATGGACCTGAAATCTGTCATATATGAGTGTGGTACTTCTTGTCAGTGCCCCCCAAATTGTCGAAACCGGGTTTCACAAGGTGGTTTGAAAATTCGTTTTGAAGTTTTCAGAACTAAGGATAAAGGATGGGGTCTAAGATCCTGGGATCCTATTCGCGCAGGAACTTTTATATGTGAGTATGCAGGGGAAGTTATAGACAATGCTAGAGTAGAGGAGCTTGATGGTGAAAATGAAGATGACTACATGTTCGACTCCACCCTCATTAATCAGCGACTGGAAGTCTTTCATAGTGATACTGAAGCACCGAAGGTCCCATATCCCCTCTATATAACTGCGAGAAATGAAGGGAATGTTGCTCGCTTTATGAACCATAGCTGCTCTCCAAATGTGTTCTGGCGTCCAACTTTACGCACAAATAAAGATGAGTCTGATCTCCACATCGCTTTTTACTCAGTCAGACACATCCCTCCTATGACAGAGTTAACTTATGATTATGGGATAGTCCCTCCCCTCACAGCGAGCCAGAAATGTTTATGTGGATCAATGAAATGCAGGGGCTATTTTTGTTGA 1479 0.4239 MIYEVLRRKIAQIEEGKEGNVGVSKRSDLRAGTVMLNKGIRTNKERRIGAVPGVEIGDIFYFRMELCVVGLHAPSMAGIDYMGVKVGQEEEPLAISIISSEGYEDTVEDGDVLIYSGQGGVNRSKEASDQKLGRGNLALEKSLHRGNEVRVTRGLKELANSTGKVYVYDGLYKIQDSWIEKGKSGFNVFKYKLVRLPGQPEGYTIWKSIQQWTEKSTSRATVKLPDLTSGAENLPVCLVNDFDDEKGPAYFTYCPTLRNLKPINAVEPSTGCNCVGGCLTSNLSCPCIQKNGGYLPYSTNGLIMDLKSVIYECGTSCQCPPNCRNRVSQGGLKIRFEVFRTKDKGWGLRSWDPIRAGTFICEYAGEVIDNARVEELDGENEDDYMFDSTLINQRLEVFHSDTEAPKVPYPLYITARNEGNVARFMNHSCSPNVFWRPTLRTNKDESDLHIAFYSVRHIPPMTELTYDYGIVPPLTASQKCLCGSMKCRGYFC 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2277 492 SMART preset_2 224 318 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere01g2277 492 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 1 491 IPR025794 GO:0016571
Dere01g2277 492 ProSiteProfiles Pre-SET domain profile. 270 331 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere01g2277 492 FunFam Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH5 32 214 - -
Dere01g2277 492 SUPERFAMILY PUA domain-like 31 215 IPR015947 -
Dere01g2277 492 Gene3D - 31 218 IPR036987 -
Dere01g2277 492 SMART set_7 334 475 IPR001214 GO:0005515
Dere01g2277 492 ProSiteProfiles SET domain profile. 334 469 IPR001214 GO:0005515
Dere01g2277 492 Pfam SET domain 345 469 IPR001214 GO:0005515
Dere01g2277 492 SUPERFAMILY SET domain 210 482 IPR046341 -
Dere01g2277 492 Pfam SAD/SRA domain 48 199 IPR003105 -
Dere01g2277 492 Pfam Pre-SET motif 228 326 IPR007728 GO:0005634|GO:0008270|GO:0034968|GO:0042054
Dere01g2277 492 Gene3D SET domain 219 491 IPR046341 -
Dere01g2277 492 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 2 485 - -
Dere01g2277 492 SMART G9a_1 44 199 IPR003105 -
Dere01g2277 492 ProSiteProfiles YDG domain profile. 49 195 IPR003105 -
Dere01g2277 492 ProSiteProfiles Post-SET domain profile. 476 492 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2277 Dere-ChrDere01 36988429 36989907 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2277 1 491 Su(var)3-9 homologs AT5G04940 51.859 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere01g2277 SAD_SRA 1.6e-49 CL0178