Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2258 ATGACGTTCTCTTTATCACTACCTCTCTCCCTAGTATTCTCTAAAGTCAGCATAGCCATGCATCACAAGAGGAAGTTTTTGCCAGCCACTGTAGTGCCACATGAGGCTCAAGGCGGTGCTGAGCATCTTACAAATGTTGGGGTTTTGGGTGGATCTCCTGTAAAAAATGCCACACCTACTGGGGGAAGTGGTAAACAACGGCTTCGATGGACGTCAGATCTTCATGATCGTTTTGTGGATGCCATCACACAACTTGGTGGACCAGATAGGGCAACACCAAAAGGTGTTTTGAGACTGATGGGGGTACCTGGACTTACCATTTATCATGTTAAAAGCCATCTACAGAAGTATCGCCTTGCCAAGTACCTGCCCGAATCTCCAGCTGGTGGTAAAGGTTCCTTGTCTTTCCTTTCCCTTCCTCCCAAAAAAGAAAGGATTAACCAGAAATGCCATATTGTTGTTGTTCTTTTTTATTGGTCATACTAA 486 0.4486 MTFSLSLPLSLVFSKVSIAMHHKRKFLPATVVPHEAQGGAEHLTNVGVLGGSPVKNATPTGGSGKQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRLMGVPGLTIYHVKSHLQKYRLAKYLPESPAGGKGSLSFLSLPPKKERINQKCHIVVVLFYWSY 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2258 161 Gene3D - 64 123 - -
Dere01g2258 161 FunFam Myb family transcription factor 64 122 - -
Dere01g2258 161 NCBIfam myb-like DNA-binding domain, SHAQKYF class 65 120 IPR006447 GO:0003677
Dere01g2258 161 MobiDBLite consensus disorder prediction 47 66 - -
Dere01g2258 161 Pfam Myb-like DNA-binding domain 68 118 IPR001005 -
Dere01g2258 161 SUPERFAMILY Homeodomain-like 64 120 IPR009057 -
Dere01g2258 161 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 122 IPR017930 -
Dere01g2258 161 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 64 127 IPR044848 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2258 Dere-ChrDere01 36847272 36849185 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2258 55 139 G2-like Transcription Factor Family AT5G29000 52.941 4.74e-28 104
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere01g2258 Myb_DNA-binding 8.1e-07 CL0123