Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2211 ATGGGAAGGCCTCCTTGCTGTGATAAAGTTGGCATCAAGAAGGGTCCATGGACACCTGAGGAGGACATCATCCTTGTTTCTTACATCCAAGAACATGGTCCAGGAAATTGGAGATCAGTGCCTACTAATACTGGGTTGTCAAGGTGCAGCAAAAGTTGCAGGCTTAGATGGACTAACTACCTCAGGCCAGGAATCAAGAGAGGGAACTTCACTTCCCATGAGGAAGGAATGATAATTCATTTGCAAGCTCTACTGGGTAACAAATGGGCAGCCATAGCTACATGCCTTCCACAAAGAACAGATAACGATATAAAGAACCATTGGAACACCCATCTGAAGAAGAAGCTGAAGAAATTTCAAGCAGGATTGGAACACCACGTGGCAGCAAACTCAGCAACAACTTGTCAGTTTGAATCAAAGAGCTTTAATGAGAGAGGAAGTTTAGATATGATGAGCAGTCATGCCTCGTCCTACAGCCTCAGTCCGTCTCAATCATCCACCTATGCGTCGAGCACTGAGAACATATCACGCCTCTTAGAAGGTTGGATGAGATCCTCTCCAAAGCCAGACGCTTCTTCTCTTCTCAAAGCAAACCAAGATCACAAAGAGCTCCGGGGAATCAACAACATCGAAAATAACAATAACATGGTGAAATCTGCTTTAAATTTGGAGTCCTACCGAACCAAAAATGAGCCAGAAGAGGGTGGTGGAGATATGATGTCCCATGAAGAGTTCGATTCTATACTGTCTTATGAGAACCTAAATAATGCTGCTTGGGACAAGTCCACTGGTGATTCTATGCCTCAAACTCAAAAGAGTTCTGAACCTACTGCTACTGGCAAAGTTCATGTTATAGATCATGATGAGAGGAATAAGCAAAGATCTGAGAACACTACTGATCCTCCATTGTCAGTTCTTGAGAAGTGGCTCTTGGATGAAAATGTTGGTCAAGTAGAGGAGATGATGGAATTATCCCATATCTTCTAA 987 0.4336 MGRPPCCDKVGIKKGPWTPEEDIILVSYIQEHGPGNWRSVPTNTGLSRCSKSCRLRWTNYLRPGIKRGNFTSHEEGMIIHLQALLGNKWAAIATCLPQRTDNDIKNHWNTHLKKKLKKFQAGLEHHVAANSATTCQFESKSFNERGSLDMMSSHASSYSLSPSQSSTYASSTENISRLLEGWMRSSPKPDASSLLKANQDHKELRGINNIENNNNMVKSALNLESYRTKNEPEEGGGDMMSHEEFDSILSYENLNNAAWDKSTGDSMPQTQKSSEPTATGKVHVIDHDERNKQRSENTTDPPLSVLEKWLLDENVGQVEEMMELSHIF 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2211 328 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 222 - -
Dere01g2211 328 FunFam MYB-related transcription factor 13 66 - -
Dere01g2211 328 CDD SANT 69 112 IPR001005 -
Dere01g2211 328 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dere01g2211 328 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Dere01g2211 328 CDD SANT 16 61 IPR001005 -
Dere01g2211 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dere01g2211 328 Gene3D - 69 140 - -
Dere01g2211 328 Gene3D - 13 66 - -
Dere01g2211 328 SMART sant 13 63 IPR001005 -
Dere01g2211 328 SMART sant 66 114 IPR001005 -
Dere01g2211 328 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dere01g2211 328 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dere01g2211 328 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dere01g2211 328 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dere01g2211 328 MobiDBLite consensus disorder prediction 281 296 - -
Dere01g2211 328 MobiDBLite consensus disorder prediction 259 300 - -
Dere01g2211 328 MobiDBLite consensus disorder prediction 259 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2211 Dere-ChrDere01 36094717 36096074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2211 1 134 MYB Transcription Factor Family AT5G62470 80.000 5.90e-79 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g2211 Myb_DNA-binding 1.7e-15 CL0123