Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2205 ATGAGTAGCTCTGCAACTCTCTTCACCATATTGCATCTGACTAAGATAAGAAACGGAACCGTTCGCCTAACAATCTCCTCTTTTCCCTGCTTCTGCCATTGTACTAGTTCCCGGCGGAAAAGAATCCACTCGGGAATTGAAAGTTGGAGCCTTTCCGTTTTCTCTAGCTTTTTCCTTTTTTTCTCGCGATCTGGTTTTCCGGGTTATCACTCTCCCATGAGTTTCCAGCATTTTAAGAGTGGCAGTGACGGTTTCAGTGGAGCTGTGAAGCCATTACCTTCGGTTCCTTTTCTAGTTTCCCAACTTCCTCTGTTTAACGCTCTTGGGGTTATGGGTCATCCTAGCGAGATAGAATCTAACAAATCTGAGATTGGATTTCAGATTCTGAGCCCTCCGTTCATAGAGAGCAGAGGAACCAAGAGAAGCGTCGATGAAGGTGATGGTTATTTTGGGGTTGAGAGAAAGAGGTTGTCTTTGAAACCGGATGAAGAAGTGGAAACTAAGGGATCTCCTGCCGGCAAAAATGGGCACATTAAACTCTGTGCTAGAGGCCACTGGAGGCCAGCTGAAGATGCCAAGCTCAAAGAGCTGGTAGCTCAGTATGGTCCTCAAAGCTGGAACTTGATCGCTGAGCATCTCGAAGGAAGATCAGGCAAGAGTTGTAGATTGAGGTGGTTTAATCAGCTGGATCCTAGGATTAACAGAAGGGCTTTCTCTGAGGAAGAAGAGGAGAGGCTGTTGGCTGCTCATAAAGCGTATGGTAACAAGTGGGCTATGATAGCTAGGTTGTTTCCAGGGAGGACAGATAACGCAGTGAAGAACCACTGGCATGTAATCATGGCTAGGATGCAGAGAGAGCAGTCACATGTTTACAGAAGGAGAAAGCCCACTTCTGAAAGCATCCCAAAGGGATTAAAATTGACTCTAACAAACAATGCACGCAGTGAATCAAGCATCACAAGCACCAGAGATGAGTCTGCTTCAACCTGCACTAATCTCTCCCTCACTCCCTCTTCAGCCAAACCAACTTCAACTCTTTTCTCTAATCTGAGTTATCAAGGCCATGGAACGCTGATTGGTGTGTCTGGGGATATAGTTTTGGGCAAGTTATCTGGTGGGAGGAGTGAAGGCATGGGAAAGGGGAAGGGCGTGGACTCATCAAATAATTCAGATTCAAAGTCAGATGTATCAGTATCTGAGTCGGTTGGCACCAACAGGATGAATCTGTCACATTTTGGGGAAAGTGGAAACGTGGGTGATAAGATTGACATGCCATTTATTGATTTTCTGGGAGTGGGAGCTGCTGCATAA 1311 0.46 MSSSATLFTILHLTKIRNGTVRLTISSFPCFCHCTSSRRKRIHSGIESWSLSVFSSFFLFFSRSGFPGYHSPMSFQHFKSGSDGFSGAVKPLPSVPFLVSQLPLFNALGVMGHPSEIESNKSEIGFQILSPPFIESRGTKRSVDEGDGYFGVERKRLSLKPDEEVETKGSPAGKNGHIKLCARGHWRPAEDAKLKELVAQYGPQSWNLIAEHLEGRSGKSCRLRWFNQLDPRINRRAFSEEEEERLLAAHKAYGNKWAMIARLFPGRTDNAVKNHWHVIMARMQREQSHVYRRRKPTSESIPKGLKLTLTNNARSESSITSTRDESASTCTNLSLTPSSAKPTSTLFSNLSYQGHGTLIGVSGDIVLGKLSGGRSEGMGKGKGVDSSNNSDSKSDVSVSESVGTNRMNLSHFGESGNVGDKIDMPFIDFLGVGAAA 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2205 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 183 229 IPR017930 -
Dere01g2205 436 MobiDBLite consensus disorder prediction 374 402 - -
Dere01g2205 436 ProSiteProfiles Myb-like domain profile. 183 229 IPR001005 -
Dere01g2205 436 CDD SANT 246 277 IPR001005 -
Dere01g2205 436 Gene3D - 183 234 - -
Dere01g2205 436 Gene3D - 237 297 - -
Dere01g2205 436 SMART sant 182 231 IPR001005 -
Dere01g2205 436 SMART sant 234 282 IPR001005 -
Dere01g2205 436 MobiDBLite consensus disorder prediction 382 402 - -
Dere01g2205 436 MobiDBLite consensus disorder prediction 313 335 - -
Dere01g2205 436 Pfam Myb-like DNA-binding domain 186 246 - -
Dere01g2205 436 SUPERFAMILY Homeodomain-like 183 276 IPR009057 -
Dere01g2205 436 ProSiteProfiles Myb-like domain profile. 230 280 IPR001005 -
Dere01g2205 436 FunFam MYB transcription factor 183 234 - -
Dere01g2205 436 FunFam MYB transcription factor 236 305 - -
Dere01g2205 436 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 230 284 IPR017930 -
Dere01g2205 436 CDD SANT 186 227 IPR001005 -
Dere01g2205 436 PANTHER MYB PROTEIN-RELATED 183 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2205 Dere-ChrDere01 36044438 36047519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2205 173 435 MYB Transcription Factor Family AT5G17800 49.451 2.11e-71 226
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dere01g2205 Myb_DNA-bind_6 3.2e-15 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2205 01 36044438 36047519 Dere01g2205 01 36044438 36047519 ECH