Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2190 ATGGTTTATTGTGATCACTGTAGAAGAAATGTTTCTGGAATGCGACCGGACGATAGTTCCTTATGTTGTGAATATTGCGGTAAGGTTTTGGAAGACTTGTATATTTCTCAAGAGGCTTCTTTTGTAAAAGATGCATCCGGGCAGAGCAAATTATCAGGCAATTTTGTAAGAACAATTCAAGGCGAGTACTCTGCTTCACGCCAAAGGACGTTGGATAGAGCACTTGATGATATAAGATATCTAAGTTTTAGCCTTGGAGTGGAAGATACTAGTTTGGTCTCACAAGCATTGGCTTTTTATAAAATAGCAGTTGAACGGAATTTCACGAGGGGTCGTAAATCAGAGCAAGTACAGGCTGCTTGTCTCTACGTTGCATTCCGGGAAAATAATAAACCATACCTTCTTATTGATTTTTCAAATTATTTAAGGACAAATGTTTATGTTCTAGGTGCAGTTTTTTTACAGCTTTGTAAAGTATTAAGGCTTGAAGAGCACCCCATTGTTCAAAAACCTGTTGATCCTAGTCTTTTTATCTTCAAATATACAAATAATTTATTAAAGCAAAGGAATATGGTTGTCACTGAAACTGCGCTGAGCATTGTTGCAAGCATGAAACGTGATTGGATGCAGACAGGGAGGAAACCCAGTGGCTTATGTGGTGCAGCATTGTACGTAGCTGCCCTTGCACATGGTTTTAAGTGCTCTAAGTCAGACATTCTGAGAATTGTCCATGTATGTGAAGCAACATTGACCAAGCGTTTGGTTGAGTTTGAGAATACTGACTCTGCGAGCTTGACAGTTGATGAGTTGAATATGATGGCAAAAGAGCGTGAAAACAATCCGATTGAAAAGCCAAATTGTGGATCAGAGGAACATACTTTAAAGGATCTACTGTGTGAACACAAGGACAGTGGTGTTTCTCATTATGCCCATGGATTATGTGAAACATGTTTCAAGGATTTTGTTAAACTCTCTGGAGGACTTGATGGTGGTTTGGATCCTCCTGCATTCCAGCGTGCTGAGAGGGAGAGAATGACAAAATCACCTTCTGAGGAAAGTGGCAACCAATCAAGTGATTTGATGAAAGCATCAAATGGTGCATGTGCAAGCAGAAAAGAAGAGTTGCATGCTTCTCGGCCAGAAAGCGTTGGGGCTAATGTTGAGCACGTGGCTACTAAAGGTGGTGGTTATGATGAATCACATAGAGAAGATGATACGAGTGCCAAAATTCATGATGAATCAGAAAGTCTATCTGATATCGATGATTTGGAGGTTGATGGCTACCTTCACAATGAGGAGGAGAAGCATTACAAGACACTTATATGGACTGAAATGAATCGGGAGTATCTTCAGGAGCAAGCAGCAAAGGAAGCAGCAGCAGCTGCTGCCAAGCAAGCTTTTGAGGCAAATTTTAAAAACTGTTCGGAGGAAATGCTAGCAGCAAAAGAGCTTGCTGAATCTGCTGCTGCAGCTGTGGCCAAATCCAGAAAGGAAAGGAAGCAGAGACGCGCCCAGGAGGCAAAGAATTCAGGTCCTGCTCAGTCTGCTGCAGAGGCTACACGGAAAATGTTGATTAATAAGAGGCTCAGCTCCAAAGTCAATCTTGACCGCTTGGATAATTTATTTGATGATACTGAGGCGCCGGAGAACACTAAGAAAGTACGATTTGACCTGCACTCTGATAAACATGGCAATGTAGAGCCTGAGCTAGAGGACAAAAATAAAGGTGATGATATGGGATCAGTTGATGAATTTGAGGGTGGAGGTTATATGGGCGAAGAGAATAATATGTATGATGAAAATTTGGAGACATACGACTATGAAGATGATTATGGCTTTGATGGTTGCTGA 1851 0.4133 MVYCDHCRRNVSGMRPDDSSLCCEYCGKVLEDLYISQEASFVKDASGQSKLSGNFVRTIQGEYSASRQRTLDRALDDIRYLSFSLGVEDTSLVSQALAFYKIAVERNFTRGRKSEQVQAACLYVAFRENNKPYLLIDFSNYLRTNVYVLGAVFLQLCKVLRLEEHPIVQKPVDPSLFIFKYTNNLLKQRNMVVTETALSIVASMKRDWMQTGRKPSGLCGAALYVAALAHGFKCSKSDILRIVHVCEATLTKRLVEFENTDSASLTVDELNMMAKERENNPIEKPNCGSEEHTLKDLLCEHKDSGVSHYAHGLCETCFKDFVKLSGGLDGGLDPPAFQRAERERMTKSPSEESGNQSSDLMKASNGACASRKEELHASRPESVGANVEHVATKGGGYDESHREDDTSAKIHDESESLSDIDDLEVDGYLHNEEEKHYKTLIWTEMNREYLQEQAAKEAAAAAAKQAFEANFKNCSEEMLAAKELAESAAAAVAKSRKERKQRRAQEAKNSGPAQSAAEATRKMLINKRLSSKVNLDRLDNLFDDTEAPENTKKVRFDLHSDKHGNVEPELEDKNKGDDMGSVDEFEGGGYMGEENNMYDENLETYDYEDDYGFDGC 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2190 616 MobiDBLite consensus disorder prediction 562 582 - -
Dere01g2190 616 MobiDBLite consensus disorder prediction 492 506 - -
Dere01g2190 616 Pfam Brf1-like TBP-binding domain 418 543 IPR011665 -
Dere01g2190 616 SUPERFAMILY Cyclin-like 172 266 IPR036915 -
Dere01g2190 616 MobiDBLite consensus disorder prediction 340 416 - -
Dere01g2190 616 FunFam Transcription factor IIIB subunit 173 262 - -
Dere01g2190 616 MobiDBLite consensus disorder prediction 492 518 - -
Dere01g2190 616 CDD CYCLIN_TFIIIB90_rpt2 170 260 - -
Dere01g2190 616 Coils Coil 490 510 - -
Dere01g2190 616 SMART cyclin_7 76 158 IPR013763 -
Dere01g2190 616 SMART cyclin_7 176 259 IPR013763 -
Dere01g2190 616 Gene3D - 63 165 - -
Dere01g2190 616 MobiDBLite consensus disorder prediction 562 602 - -
Dere01g2190 616 PANTHER TRANSCRIPTION INITIATION FACTOR IIB-RELATED 2 533 IPR000812 GO:0006352|GO:0070897
Dere01g2190 616 FunFam Cyclin/Brf1-like TBP-binding protein 410 460 - -
Dere01g2190 616 Gene3D - 173 264 - -
Dere01g2190 616 MobiDBLite consensus disorder prediction 394 416 - -
Dere01g2190 616 SUPERFAMILY Cyclin-like 75 163 IPR036915 -
Dere01g2190 616 Gene3D Single helix bin 409 460 - -
Dere01g2190 616 MobiDBLite consensus disorder prediction 350 364 - -
Dere01g2190 616 FunFam Transcription factor IIIB 90 kDa subunit 63 166 - -
Dere01g2190 616 PRINTS Transcription initiation factor IIB signature 213 229 IPR000812 GO:0006352|GO:0070897
Dere01g2190 616 PRINTS Transcription initiation factor IIB signature 16 36 IPR000812 GO:0006352|GO:0070897
Dere01g2190 616 PRINTS Transcription initiation factor IIB signature 119 138 IPR000812 GO:0006352|GO:0070897
Dere01g2190 616 Pfam Transcription factor TFIIB repeat 170 259 IPR013150 GO:0017025
Dere01g2190 616 Pfam Transcription factor TFIIB repeat 69 157 IPR013150 GO:0017025
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2190 Dere-ChrDere01 35856752 35878286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2190 1 524 Inorganic Solute Cotransporters AT2G01280 42.075 4.30e-114 348