Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2176 ATGAGTGTGAGGGTTAACGCTGAGGCCCAACATGGCAAAACAAGGAGACAAGGTGGGTCCACAACAGACAGCGGAAAACCAGCCCACACTTTTGGTTCTGGTCTGAAGGTGGATCTTGAAGACAAAGCCCTCTTTCAAAACGGAAACTTGCAGAAACAACTTCTTGGAATTGCAGGGGGATCGCCTCTGATGTTGGAACCCGTTTCCAAATCCTGCAAATTCAATGGAGAACAGGGAGGCGACGAAAGACCTGTCTTCCTTCATTGCGCAGAGCTGATTCTCCCGTGGCTGACCCCTTTGGAGCTTGCCAATGTCTCTTTGACCTGCAAAGCCTTTTCCCAAATTTCCAAGACCGTCACTCTCCGCCGTTTATCCGATTCTTCTAGAGGATTCGAGAAATTGGCAATCCCATATCGCAACACCGTCGATGCGCGGCCATACGCTTTCTTCATCTATACTCCTTCCTTAATTCTCCCATCTGATTCACAACTTCGTCGTCAACCTTGGGGTTCGAATTTTGCTGCCAGACCCGACTGGGTTGGTGAGCTTGCTGTGGAAACGGTGAGCCTAGTTGATGAGGAGGGTGAGAATGTATCAGGCTGTGACTGTGACACTTGTGAGAATGTGAGGGATGAAGGTGACAGGTGTCCTTGTTCGAGCTTGGCTGGGTTGGATGTGGCTAACGAGTGCGGACCGAATTGTGGGTGCGGGTTGGAATGTGGGAATCGGTTGAGTCAGAAGGGAATTTCAGTGCGGTTGAAAATCGTGAGAGATGGGAGGAAAGGATGGGGATTGTACGCTGACCAGTTGATACAGAAAGGGCAGTTCGTATGTGAGTATGCAGGTGAACTCTTGACAACCAAGGAAGCAAGGAGGAGACATCAATGTTATGACGAACTTTCATCGCAAGGTAATTTTTCTTCTGCTCTTTTGGTTGTGAGGGAGCATCTGCCGTCTGGAAGGGCTTGTTTGAGAATGAACATTGATGCCACAAGTATAGGAAATGTTGCACGGTTCATTAACCATACTTGTGACGGTGGTAATTTAAGCTCGAAACTAGTTAGAAGGTCGGGTGCTTTGTTTCCTCGGCTTTGTTTCTTTGCTTTGAAAGATATAGAACAAGATGAAGAGCTTACTTTTAGCTACGGAGAAATCAGGACAAGGCCCAAGGGTTTGCCATGTTTTTGTGATAGCTCTTCTTGCTTTGGAACATTGCCGTCAGAAGACACTTAG 1233 0.4769 MSVRVNAEAQHGKTRRQGGSTTDSGKPAHTFGSGLKVDLEDKALFQNGNLQKQLLGIAGGSPLMLEPVSKSCKFNGEQGGDERPVFLHCAELILPWLTPLELANVSLTCKAFSQISKTVTLRRLSDSSRGFEKLAIPYRNTVDARPYAFFIYTPSLILPSDSQLRRQPWGSNFAARPDWVGELAVETVSLVDEEGENVSGCDCDTCENVRDEGDRCPCSSLAGLDVANECGPNCGCGLECGNRLSQKGISVRLKIVRDGRKGWGLYADQLIQKGQFVCEYAGELLTTKEARRRHQCYDELSSQGNFSSALLVVREHLPSGRACLRMNIDATSIGNVARFINHTCDGGNLSSKLVRRSGALFPRLCFFALKDIEQDEELTFSYGEIRTRPKGLPCFCDSSSCFGTLPSEDT 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2176 410 Gene3D SET domain 106 389 IPR046341 -
Dere01g2176 410 ProSiteProfiles SET domain profile. 251 383 IPR001214 GO:0005515
Dere01g2176 410 SUPERFAMILY SET domain 120 396 IPR046341 -
Dere01g2176 410 MobiDBLite consensus disorder prediction 1 32 - -
Dere01g2176 410 MobiDBLite consensus disorder prediction 13 28 - -
Dere01g2176 410 SMART set_7 251 389 IPR001214 GO:0005515
Dere01g2176 410 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 122 401 - -
Dere01g2176 410 Pfam SET domain 262 383 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2176 Dere-ChrDere01 35729894 35733993 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2176 229 405 C2H2 Transcription Factor Family AT2G23740 36.757 7.21e-25 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Dere01g2176 SET 1.3e-18 No_clan