Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2168 ATGGACAGGCTCATAAAATTAGACCCATCCAACGTTGTTCCTATCAGAGTTGAAGCAGGGCAGAAATGTGTTGGCTATATTACATTACGCAATGTTATGCACACCATGCCAGTGGCCTTCAGGCTTCAGCCACTGATCAAGACCCGTTACACAGTGAAGCCGCAGTCTGGGATTATATCCCCTTTGGCCACACTCATAGTGGAGATCGTGTATCATCTCCCACCAGGCGCTGTTCTCCCCCACTCTTATCCTCACTCTGATGATTCTTTCCTTCTACACAGCGTGGTGGTTCCTGGGGCAGCTATTAAAGTGCCTTCCTCTATGTTTGATGCTGTTCCAAGTGACTGGTTCACCACTAAGAGGAAGCAAGTCTTTATTGACAGTGGCATCAAGATCATGTTTGTGGGTTCGTCAATTTTGGCTCAACTCGTTGCAGATGGTTCCATGGATGACATCAGAGAGGTGCTCGAACGCAGTGACACATCATGGAAGGCTCCAGATTCAATGGACTCACAAGGTCAAACATTGCTTCACTCGGCTATTTCTCAGAGCAGACCCGATCTTGTTCAAGTACTCCTCGAATTCGAGCCCGACATAGAAGCTCCAAGTCGTGCTGGGTCAACCCCACTTGAGGCTGCGTCTTCCTCCGGAGAAGCCTTAATAGTTGAGCTTCTATTGGCTCACAAGGCCAACACAGAACGATCAGAATCATCCTTTTGGGGGCCAATTCACCTTGCAGCCAAAGGAGGCCACACAGAGATCCTGAGGCTTCTTTTACTAAAAGGGGCTAATGTAGACTCACAAGCAAAGGATGGTAACACAGCCTTACACCTCGCAGTTGAAGAACGAAGACGAGATTGCGCTAGACTTCTATTGGCCAACGGTGCCAGAACCGACATTCGTAACACCAGAGACGGTGACACACCTTTACACATAGCCGCAGCCACAGGCGACGAGAACATGGTCAAGCTATTGCTACAAAAGGGTGCGAACAAAGAAGTGAGAAATGGGACCGGGAAAATCGCATACGATGTCGCAGCCGAGAATGGCTATACCCGTCTCTTCGACGCGCTTAAATTAGGAGACGACCTCTGCGTGGCGGCGAGAAAAGGGGAAGTGAGAACGATACAGAGGCTGATCGAGAACGGAGCAGCCATTAATGGAAAAGACCAACATGGCTGGACGGCGCTTCACAGAGCCGCCTTCAAAGGGCGAACGAGTGCTGTTCGAGCTCTGCTAGAAAAAGGGGTGGATGTGGATGCGAAGGACGAAGATGGGTACACGGCCTTGCATTGCGCGGCGGAGTCAGGTCACGCGGATGTGACGGAGCTGTTGGTGAAGAAGGGAGGAAATGTTGAGGCGAGGACCAACAAGGGCGTGACCGCGCTGCAAATTGCAGAGTCGCTGCACTATGTGGGGATCACGAGGATACTCGTCAATGGTGGGGCTCGTAGGGAGGGCAGTGGTCAGATTCCAGCACCGCCTGCGAATATTCCGTTTGGGAATAAAATGGAGGCTGGGGAGAAGAAGAAGAAGATCACCAGAAACAGAGGGCTCCGGGGTAGCTTCGATCGCTCGGCAGCTCTGGCTGTGATCTAG 1599 0.5141 MDRLIKLDPSNVVPIRVEAGQKCVGYITLRNVMHTMPVAFRLQPLIKTRYTVKPQSGIISPLATLIVEIVYHLPPGAVLPHSYPHSDDSFLLHSVVVPGAAIKVPSSMFDAVPSDWFTTKRKQVFIDSGIKIMFVGSSILAQLVADGSMDDIREVLERSDTSWKAPDSMDSQGQTLLHSAISQSRPDLVQVLLEFEPDIEAPSRAGSTPLEAASSSGEALIVELLLAHKANTERSESSFWGPIHLAAKGGHTEILRLLLLKGANVDSQAKDGNTALHLAVEERRRDCARLLLANGARTDIRNTRDGDTPLHIAAATGDENMVKLLLQKGANKEVRNGTGKIAYDVAAENGYTRLFDALKLGDDLCVAARKGEVRTIQRLIENGAAINGKDQHGWTALHRAAFKGRTSAVRALLEKGVDVDAKDEDGYTALHCAAESGHADVTELLVKKGGNVEARTNKGVTALQIAESLHYVGITRILVNGGARREGSGQIPAPPANIPFGNKMEAGEKKKKITRNRGLRGSFDRSAALAVI 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2168 532 Gene3D - 359 429 IPR036770 -
Dere01g2168 532 ProSiteProfiles Ankyrin repeat profile. 305 337 IPR002110 GO:0005515
Dere01g2168 532 Pfam Ankyrin repeats (many copies) 403 446 IPR002110 GO:0005515
Dere01g2168 532 Gene3D - 430 480 IPR036770 -
Dere01g2168 532 ProSiteProfiles Ankyrin repeat profile. 205 237 IPR002110 GO:0005515
Dere01g2168 532 ProSiteProfiles Ankyrin repeat region circular profile. 205 231 - -
Dere01g2168 532 ProSiteProfiles Ankyrin repeat region circular profile. 425 457 - -
Dere01g2168 532 PANTHER ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED 264 490 - -
Dere01g2168 532 SMART ANK_2a 305 334 IPR002110 GO:0005515
Dere01g2168 532 SMART ANK_2a 425 454 IPR002110 GO:0005515
Dere01g2168 532 SMART ANK_2a 349 388 IPR002110 GO:0005515
Dere01g2168 532 SMART ANK_2a 238 267 IPR002110 GO:0005515
Dere01g2168 532 SMART ANK_2a 271 300 IPR002110 GO:0005515
Dere01g2168 532 SMART ANK_2a 392 421 IPR002110 GO:0005515
Dere01g2168 532 SMART ANK_2a 172 201 IPR002110 GO:0005515
Dere01g2168 532 SMART ANK_2a 205 234 IPR002110 GO:0005515
Dere01g2168 532 ProSiteProfiles Ankyrin repeat region circular profile. 242 266 - -
Dere01g2168 532 Gene3D - 304 358 IPR036770 -
Dere01g2168 532 ProSiteProfiles Ankyrin repeat region circular profile. 305 336 - -
Dere01g2168 532 ProSiteProfiles Ankyrin repeat profile. 392 424 IPR002110 GO:0005515
Dere01g2168 532 ProSiteProfiles Ankyrin repeat region circular profile. 271 302 - -
Dere01g2168 532 PRINTS Ankyrin repeat signature 408 422 IPR002110 GO:0005515
Dere01g2168 532 PRINTS Ankyrin repeat signature 306 321 IPR002110 GO:0005515
Dere01g2168 532 ProSiteProfiles Ankyrin repeat profile. 172 204 IPR002110 GO:0005515
Dere01g2168 532 ProSiteProfiles Major sperm protein (MSP) domain profile. 4 135 IPR000535 -
Dere01g2168 532 Gene3D - 135 303 IPR036770 -
Dere01g2168 532 ProSiteProfiles Ankyrin repeat region circular profile. 392 424 - -
Dere01g2168 532 SUPERFAMILY PapD-like 2 150 IPR008962 -
Dere01g2168 532 ProSiteProfiles Ankyrin repeat profile. 271 303 IPR002110 GO:0005515
Dere01g2168 532 ProSiteProfiles Ankyrin repeat region circular profile. 172 201 - -
Dere01g2168 532 ProSiteProfiles Ankyrin repeat profile. 242 270 IPR002110 GO:0005515
Dere01g2168 532 ProSiteProfiles Ankyrin repeat profile. 425 457 IPR002110 GO:0005515
Dere01g2168 532 Gene3D Immunoglobulins 1 134 IPR013783 -
Dere01g2168 532 Pfam Ankyrin repeats (3 copies) 166 232 IPR002110 GO:0005515
Dere01g2168 532 Pfam Ankyrin repeats (3 copies) 243 336 IPR002110 GO:0005515
Dere01g2168 532 ProSiteProfiles Ankyrin repeat profile. 364 391 IPR002110 GO:0005515
Dere01g2168 532 SUPERFAMILY Ankyrin repeat 167 486 IPR036770 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2168 364 468 Ion Channels AT4G32500 32.381 1.91e-08 55.5