LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g2152	ATGAGGAGTCCGAATCCAAGGGGAAAGATCACGCCATGCTGTAGCAAGGTGGGGATAAAGAGAGGACCATGGACACCGGAGGAAGATGAGATTTTGGCCAATTTTGTGAAAAGGGAAGGCGAAGGACGGTGGCGCACGCTTCCCAAGAGGGCAGGGCTGCAACGCTGCGGCAAGAGTTGCCGTCTCCGGTGGATGAATTATCTTCGTCCCTCTGTCAAGAGAGGCCATATTGGTCCTGATGAGGAAGACATCATCCTTCGCCTTCACCGCTTACTAGGCAACAGGTGGTCTTTGATAGCTGGGAGGATACCTGGAAGGACAGATAATGAGATTAAGAACTACTGGAACACCCATCTCAGCAAGAAGCTCATAAGTCAGGGAATAGACCCAAGGACTCACAAGCCATTGATCACTTACGACAACAATTTAAATTCTGAAAAAGTTGATCGTGAATCAAATAGAACATCGAATCCTCATCCAATCCCCCAAATCGTCACCCCTACTCCTGCACTAGAGATTGGAAGTTGCAGCCATCAGAATCAAACAAAAGCTATTCAAAATAGCAGCTCTGTCAGTAATGGGAATAATTCGGGGAGATTTAGCAGATCAGTGAAGGGGTTAGAAAGCGGGGTTGAAGTTGATGGAGAGAGTGACAAGAGTATAGGGGAGGATCAAGATACTTTGTCTTCGTTTCTTGATTCTTTGATCAATGACAACGCTATTGGGAGTCAACGGCCGCAGCCTGAACATGTGTTTCCCAATCCACCACCACACCCACTAACTTCTTCCCTGCAGTTTTTCGATCTTGCCTTCTGGGAAGCTGAATTTTCAAATGTCGTACAGGATCAACATTATAGTTCGCCCTTCAAGTAA	873	0.4674	MRSPNPRGKITPCCSKVGIKRGPWTPEEDEILANFVKREGEGRWRTLPKRAGLQRCGKSCRLRWMNYLRPSVKRGHIGPDEEDIILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLITYDNNLNSEKVDRESNRTSNPHPIPQIVTPTPALEIGSCSHQNQTKAIQNSSSVSNGNNSGRFSRSVKGLESGVEVDGESDKSIGEDQDTLSSFLDSLINDNAIGSQRPQPEHVFPNPPPHPLTSSLQFFDLAFWEAEFSNVVQDQHYSSPFK	290

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g2152	290	SUPERFAMILY	Homeodomain-like	18	115	IPR009057	-
	Dere01g2152	290	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	16	68	IPR017930	-
	Dere01g2152	290	FunFam	Myb transcription factor	18	74	-	-
	Dere01g2152	290	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	11	199	-	-
	Dere01g2152	290	CDD	SANT	79	119	IPR001005	-
	Dere01g2152	290	MobiDBLite	consensus disorder prediction	209	223	-	-
	Dere01g2152	290	Pfam	Myb-like DNA-binding domain	78	119	IPR001005	-
	Dere01g2152	290	Pfam	Myb-like DNA-binding domain	21	68	IPR001005	-
	Dere01g2152	290	CDD	SANT	23	68	IPR001005	-
	Dere01g2152	290	MobiDBLite	consensus disorder prediction	177	203	-	-
	Dere01g2152	290	FunFam	transcription repressor MYB5-like	78	147	-	-
	Dere01g2152	290	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	69	123	IPR017930	-
	Dere01g2152	290	Gene3D	-	78	156	-	-
	Dere01g2152	290	ProSiteProfiles	Myb-like domain profile.	69	119	IPR001005	-
	Dere01g2152	290	ProSiteProfiles	Myb-like domain profile.	16	68	IPR001005	-
	Dere01g2152	290	Gene3D	-	21	73	-	-
	Dere01g2152	290	SMART	sant	20	70	IPR001005	-
	Dere01g2152	290	SMART	sant	73	121	IPR001005	-
	Dere01g2152	290	MobiDBLite	consensus disorder prediction	177	224	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g2152	Dere-ChrDere01	35371735	35372756	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g2152	9	238	MYB Transcription Factor Family	AT3G13540	59.565	5.35e-84	251

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Dere01g2152		Myb_DNA-binding	3.4e-15	CL0123