Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2149 ATGGAAATTCAATTCCAGCAGCCAAAGCAGCATAATCAGGAAGCAGGCATTCCAATCAGCAGAGGAGGGAAATTCAAAGGAAGAAACAGAAGCAGTAACAAATTTGTAGGGGTGAGGCAGAGGCCTTCAGGGAGATGGGTAGCAGAGATCAAAGACACAACCCAGAAGATAAGAATGTGGCTTGGCACATTTGAGACTGCAGAGGAGGCAGCCAGAGCTTATGATGAAGCTGCTTGCCTTCTTCGAGGATCCAACACTCGCACCAACTTCATCACCCATGTCTCCTTGGATTCTCCTCTTGCTTCTCGGATTAGAAATCTGCTCAACAACAAAAAAGCAGGAACCAAACAACAAAAAGATCATGTGCAGGCAGCCTCTGCCCCTATAGCCAGAAGCACCAGTCCTAGCAGTACTTGCAGTACTAGTTGTACTAGTATTAGTAGTAGTTCTAGCAATAATGTGGACAACAATGACAATTCTCTTTCCAGTGGGATAATTCAAGATACCCAGTTGTTTGATGATGCCTATAGACCAGATTTGAGCGGTTGCAACGGGGAATTTGGGTCGGGTTTTATGTCCAATCATCCATGGGGTGGTTTTGGACATGTTTTTGATCGGCTTCCTTTTGCTCAAGTTTCGGATATACCGAAGCCTGAAGGGACTTTGTCTGACACAGCTGACTTGGAACTGTCAGAATTTGAAAGGATGAAAGTTGAGAGACAAATATCAGCTTCACTTTATGCAATTAACGGAGTGCAAGAGTACATGGAAACTATTCAGGACTCTAATGAAGCTCTGTGGGACCTTCCACCTTTGTGTTCACTATTCTGTTAA 834 0.4424 MEIQFQQPKQHNQEAGIPISRGGKFKGRNRSSNKFVGVRQRPSGRWVAEIKDTTQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFITHVSLDSPLASRIRNLLNNKKAGTKQQKDHVQAASAPIARSTSPSSTCSTSCTSISSSSSNNVDNNDNSLSSGIIQDTQLFDDAYRPDLSGCNGEFGSGFMSNHPWGGFGHVFDRLPFAQVSDIPKPEGTLSDTADLELSEFERMKVERQISASLYAINGVQEYMETIQDSNEALWDLPPLCSLFC 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2149 277 SUPERFAMILY DNA-binding domain 34 91 IPR016177 GO:0003677
Dere01g2149 277 Pfam AP2 domain 34 83 IPR001471 GO:0003700|GO:0006355
Dere01g2149 277 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 24 243 - -
Dere01g2149 277 MobiDBLite consensus disorder prediction 1 32 - -
Dere01g2149 277 MobiDBLite consensus disorder prediction 112 160 - -
Dere01g2149 277 PRINTS Ethylene responsive element binding protein signature 57 73 IPR001471 GO:0003700|GO:0006355
Dere01g2149 277 PRINTS Ethylene responsive element binding protein signature 35 46 IPR001471 GO:0003700|GO:0006355
Dere01g2149 277 Gene3D AP2/ERF domain 33 92 IPR036955 GO:0003700|GO:0006355
Dere01g2149 277 SMART rav1_2 34 97 IPR001471 GO:0003700|GO:0006355
Dere01g2149 277 FunFam ethylene-responsive transcription factor RAP2-11 33 92 - -
Dere01g2149 277 ProSiteProfiles AP2/ERF domain profile. 34 91 IPR001471 GO:0003700|GO:0006355
Dere01g2149 277 CDD AP2 34 90 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2149 Dere-ChrDere01 35360612 35361445 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2149 8 277 AP2-EREBP Transcription Factor Family AT5G19790 41.993 1.36e-52 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dere01g2149 AP2 6.1e-14 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2149 01 35360612 35361445 Dere01g2149 01 35360612 35361445 ECH