Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2135 ATGAATATTAAGAGGCACCCAATCAACTATCAATGGTCTTTCAATTCATTTGGGCCTGCCAACCGCCCTGTTGCGTACGGGATCGATCTAGGTCTTTCTGGGGCGACTCAAGTGGGCTATGATTTGAATGGGGAGAGGATGCCAGAGTTGAGAAGTGGAGCTAGAAGATCGAAACGGCTTGGTGATCTTCAGCCTGCCCCACTACCGGTTGATCAAGGAGAGAATTGTGCACAACCTGCTCCTACCAGAGCCAGGAGGAGAGTTGGAGGTGGAAGAGGACGAGGTGGTAATGCCACAGCTGTAGCAAAAGGACCTTCACCAGCAGTACCCACAAGGCGAACTGCAGCTGGTAGAGGTCGGGGAGTGAGATTAATTAATCTTGACCCTGAACCTTGTGAGGTCCTTCCTGATCCAGTTGCATTAGGAGCCCCTGAACCCCTTCGTGTTGAGGCAGTGGCCAATAATAATATTGTGATGGAAGGTGGAAGTGCAGACAAGGTAGTTGCAGCTGAAGAGGAAGCAACCACAACCCCAATTCCTGAGAGGGTGCAAGTTGGTAGTTCTCCTATGTATAAGATAGAAAGGAAATTGGGTAAGGGTGGTTTTGGCCAAGTGTATGTTGGCAGAAGGGTAAGTGGTGGCTCTGATCGGACAGGTCCTGATGCAATTGAGGTGGCACTGAAGTTTGAGCACAGGAATAGTAAAGGTTGCAATTATGGTCCTCCTTATGAGTGGCAGGTCTACAATACTCTGAATGGGTGTTATGGCATTCCCTGGGTTCATTACAAGGGTCGTCAAGGAGATTTCTATATTCTGGTCATGGACATGCTTGGGCCCAGTCTTTGGGATGTATGGAATTCTCTTGGCCAATCGATGTCACCAAATATGGTTGCTTGTATTGCAGTGGAGGCAATATCAATTCTTGAGAAGCTCCACCTGAAAGGGTTTGTGCATGGAGATGTAAAACCAGAAAACTTTTTACTTGGTCAACCTGGAACAGCTGATGAGAAGAAGCTATATCTTATTGATCTTGGTTTGGCTTCAAGATGGAAGGATGCATCGTCCGGTCAACATGTTGAATATGATCAGAGACCTGATATTTTCAGGGGAACAATAAGGTATGCCAGTGTGCATGCACATTTAGGTAGGACAGGAAGTCGAAGGGATGATCTTGAGTCACTGGCCTACACTTTAATATTTCTCATAAAAGGGAGGTTACCTTGGCAGGGTTATCAGGGTGACAATAAAAGTTTTCTTGTTTGTAAGAAAAAGATGTCTACTTCTCCAGAGTTGATGTGCTGCTTTTGTCCTGCCCCATTCAAGCAGTTCCTTGAAGCTGTTACTAACATGAGATTTGATGAGGAGCCAAATTATTCCAAGCTTATTTCTTTTTTTGAAAGCTTGATTGAACCATGTATACCATTGAGACCAATCAGAATTGATGGAGCTTTAAAGGTTGGACAAAAGCGGGGAAGGATGCTTATTAACCTTGAAGATGATGAACAGCCGAAGAAGAAGGTACGAATGGGGAATCCTGCTACCCAGTGGATTTCAGTTTATAATGCTCGCCGTCCCATGAAGCAGAGATATCACTATAATGTAGCAGACACAAGGCTTCGACAGCATGTAGACAAGGGTAATGAGGATGGATTGTATATCAGCTGTGTTGCCTCTTCATCAAATTTGTGGGCCCTAATCATGGATGCAGGAACAGGTTTTTCTTCCCAGGTCTATGAGTTGTCAGCAGTCTTCCTACATAAGGACTGGATTATGGAACAGTGGGAGAAAAATTACTATATCAGTTCAATAGCTGGTGCATCTAACGGGAGTTCCTTGGTCGTCATGTCCAAAGGAACTCCCTACACACAGCAATCCTACAAAGTGAGTGAATCTTTTCCTTTCAAGTGGATTAATAAGAAGTGGAAAGAAGGATTCCATGTGACCTCCATGACTACTGCTGGCAGTCGCTGGGGTGTTGTTATGTCCAGGAATGCTGGGTATTCTGATCAGGTTGTGGAGCTTGACTTTTTATATCCAAGTGAAGGAATACATCGGCGATGGGAAAGTGGTTACAGGATAACATCTATGGCTGCTACTGCTGATCAAGCAGCCTTTATACTGAGCATACCAAAACGCAAATTGCTTGATGAAACTCAAGAGACTCTGCGTACCTCTGCCTTCCCTAGCACCCATGTAAAGGAAAAATGGTCCAAGAATCTTTATATTGCATCAATATGTTATGGGCGGACTGTGTGCTAG 2259 0.4489 MNIKRHPINYQWSFNSFGPANRPVAYGIDLGLSGATQVGYDLNGERMPELRSGARRSKRLGDLQPAPLPVDQGENCAQPAPTRARRRVGGGRGRGGNATAVAKGPSPAVPTRRTAAGRGRGVRLINLDPEPCEVLPDPVALGAPEPLRVEAVANNNIVMEGGSADKVVAAEEEATTTPIPERVQVGSSPMYKIERKLGKGGFGQVYVGRRVSGGSDRTGPDAIEVALKFEHRNSKGCNYGPPYEWQVYNTLNGCYGIPWVHYKGRQGDFYILVMDMLGPSLWDVWNSLGQSMSPNMVACIAVEAISILEKLHLKGFVHGDVKPENFLLGQPGTADEKKLYLIDLGLASRWKDASSGQHVEYDQRPDIFRGTIRYASVHAHLGRTGSRRDDLESLAYTLIFLIKGRLPWQGYQGDNKSFLVCKKKMSTSPELMCCFCPAPFKQFLEAVTNMRFDEEPNYSKLISFFESLIEPCIPLRPIRIDGALKVGQKRGRMLINLEDDEQPKKKVRMGNPATQWISVYNARRPMKQRYHYNVADTRLRQHVDKGNEDGLYISCVASSSNLWALIMDAGTGFSSQVYELSAVFLHKDWIMEQWEKNYYISSIAGASNGSSLVVMSKGTPYTQQSYKVSESFPFKWINKKWKEGFHVTSMTTAGSRWGVVMSRNAGYSDQVVELDFLYPSEGIHRRWESGYRITSMAATADQAAFILSIPKRKLLDETQETLRTSAFPSTHVKEKWSKNLYIASICYGRTVC 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2135 752 ProSitePatterns Serine/Threonine protein kinases active-site signature. 316 328 IPR008271 GO:0004672|GO:0006468
Dere01g2135 752 SUPERFAMILY Protein kinase-like (PK-like) 191 475 IPR011009 -
Dere01g2135 752 PANTHER CASEIN KINASE-RELATED 184 716 - -
Dere01g2135 752 CDD STKc_CK1 190 465 - -
Dere01g2135 752 ProSiteProfiles Protein kinase domain profile. 191 469 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2135 752 Pfam Protein kinase domain 191 423 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2135 752 SMART serkin_6 191 465 IPR000719 GO:0004672|GO:0005524|GO:0006468
Dere01g2135 752 MobiDBLite consensus disorder prediction 54 114 - -
Dere01g2135 752 Gene3D Transferase(Phosphotransferase) domain 1 158 506 - -
Dere01g2135 752 ProSitePatterns Protein kinases ATP-binding region signature. 197 228 IPR017441 GO:0005524
Dere01g2135 752 FunFam Casein kinase 1-like protein 163 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2135 Dere-ChrDere01 35264240 35271330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2135 308 465 MAP Kinase Kinase Kinase AT5G50180 23.750 6.05e-07 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1-Pl Dere01g2135 Pkinase 7.8e-16 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2135 01 35264240 35271330 Dere01g2135 01 35264240 35271330 ECH