Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2130 ATGGCGATTGCACGAACAGGAGTGTACGTTGACGACTATTTGGAGTACGCAAGCACATTGCCTGCTGAACTTCAGAGATTGCTCAATACCATCAGGGAACTCGATGAGAGATCCCAATCTATGATAAACCAGACCGGGCAGCGCACAAGGTACTGTTTGGGGTTGTCTTCACATGGCTTTAAGAAGGCTAACTATAACAGTAACCATAACTACAATAACTATAACACCAATGACGAAGACGATGCAACAATTGAGAAAATGTATAAAGAAATTGAGGCTAATCAGGATAGTGCTTTAAGTCTATGTACCGAGAAGGTTTTGTTGGCACGGCAAGCATATGACCTGATAGATAGCCATATAAAAAGACTTGATGAGGACTTGAACAACTTTGCTGAAGATCTAAAGCAAGAAGGCAAAATACCACCAGATGAACCAGCTATTCTTCCCCCCTTGCCTTTAGTCCCAAAAAGCGAAAAACACAAGTCCTTATATGGAACACCTCTATCAAAGAGACTGGATTACAGGGATAAGGACTGGGATCGTGATAGGGATTTTGAGCTCATGCCCCCACCAGGAAGCCACAAGAAGGAGTATGCAATTCCCATGGATGTTGATCAACCCGTTGATCCAAACGAACCTACATATTGTGTTTGTCATCAGGTGTCTTTTGGAGATATGATTGCATGTGATAATGAAAATTGCCAAGGAGGTGAATGGTTCCACTATTCTTGTGTTGGCCTAACTCCGGAGACAAGATTCAAGGGAAAGTGGTATTGTCCAACTTGCCGACCACAATTTCAATGA 804 0.4266 MAIARTGVYVDDYLEYASTLPAELQRLLNTIRELDERSQSMINQTGQRTRYCLGLSSHGFKKANYNSNHNYNNYNTNDEDDATIEKMYKEIEANQDSALSLCTEKVLLARQAYDLIDSHIKRLDEDLNNFAEDLKQEGKIPPDEPAILPPLPLVPKSEKHKSLYGTPLSKRLDYRDKDWDRDRDFELMPPPGSHKKEYAIPMDVDQPVDPNEPTYCVCHQVSFGDMIACDNENCQGGEWFHYSCVGLTPETRFKGKWYCPTCRPQFQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2130 267 SMART PHD_3 215 263 IPR001965 -
Dere01g2130 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 265 IPR013083 -
Dere01g2130 267 ProSiteProfiles Zinc finger PHD-type profile. 213 265 IPR019787 -
Dere01g2130 267 FunFam PHD finger protein ING 207 265 - -
Dere01g2130 267 Pfam Inhibitor of growth proteins N-terminal histone-binding 9 130 IPR024610 -
Dere01g2130 267 SUPERFAMILY FYVE/PHD zinc finger 190 264 IPR011011 -
Dere01g2130 267 Coils Coil 24 44 - -
Dere01g2130 267 CDD PHD_ING 215 262 - -
Dere01g2130 267 CDD ING_plant 17 127 - -
Dere01g2130 267 PANTHER INHIBITOR OF GROWTH PROTEIN 2 263 IPR028651 -
Dere01g2130 267 Gene3D - 5 128 - -
Dere01g2130 267 Pfam PHD-finger 215 264 IPR019787 -
Dere01g2130 267 SMART ING_2 9 130 IPR024610 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2130 Dere-ChrDere01 35229454 35233579 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Dere01g2130 ING 5.1e-19 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2130 01 35229454 35233579 Dere01g2130 01 35229454 35233579 ECH