Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2124 ATGGATGTGTACCGGAATGTATCAGTTTCCGGTGAGCGCAAGCAAGAGCAGGTCCTTTCCCCTTCTTGCTCAAAGCTTTCTACCTTCTCAACCAGCCTTGACGACCTCTTCTCTGCTCAGAACACGGAGGTGGATGTTGGATTGGAGTGGCTGTCAGTATTTGTGGAAGACTGCTTTTCCAGCCCAGCAAGCTGCCTCTTAGCACCTCCTGATGTTCATCAAGCTACAACCATAACCTCAAAACCTTCAAGACCATTGCAGAGAGCCCACCAGAAGGAGTCTTCTCTGCAAAATTTTGTGGTGCCGGGAAAAGCCAGAAGCAAAAGGAAGAGGCTTTCAGCCCCGAGAACCAAAGACCCTTTAAGCATCTGGTCGCACCATTTAAACCCACAAAACGAAACCATAAGCTCAGACCCTCCTCTTCTCAAACAGGCTTACTGGTTGGCCGACAGTGAACTCATTGTCCCCAACAAGAAAGAAAAGGAAGAAGAAAGCCAAGAGGGAGAAGCAGAAGAAGAGGTGGAGAAGGAGATTGTGAGGAAGGAGTCTGAGAGTGAGGTTAGCAATGGGCAAAATCCAATGCCAAGGAGGTGCAGCCATTGCCTGGCACAGAGGACCCCACAGTGGAGGGCAGGACCATTGGGTCCAAAGACACTATGCAATGCATGTGGGGTGAGGTACAAGTCTGGTAGGTTGCTTCCAGAGTATAGGCCTGCCAAGAGTCCAACTTTTGTGAGCTACTTGCACTCCAATTCTCACAAGAAAGTCATGGAGATGAGAATGTCTCTTGTTTCTTCTTCTATTCCCAGTGAGCCCTAG 819 0.4921 MDVYRNVSVSGERKQEQVLSPSCSKLSTFSTSLDDLFSAQNTEVDVGLEWLSVFVEDCFSSPASCLLAPPDVHQATTITSKPSRPLQRAHQKESSLQNFVVPGKARSKRKRLSAPRTKDPLSIWSHHLNPQNETISSDPPLLKQAYWLADSELIVPNKKEKEEESQEGEAEEEVEKEIVRKESESEVSNGQNPMPRRCSHCLAQRTPQWRAGPLGPKTLCNACGVRYKSGRLLPEYRPAKSPTFVSYLHSNSHKKVMEMRMSLVSSSIPSEP 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2124 272 Pfam GATA zinc finger 198 232 IPR000679 GO:0006355|GO:0043565
Dere01g2124 272 ProSiteProfiles GATA-type zinc finger domain profile. 196 228 IPR000679 GO:0006355|GO:0043565
Dere01g2124 272 MobiDBLite consensus disorder prediction 158 194 - -
Dere01g2124 272 MobiDBLite consensus disorder prediction 81 101 - -
Dere01g2124 272 ProSitePatterns GATA-type zinc finger domain. 198 223 IPR000679 GO:0006355|GO:0043565
Dere01g2124 272 Gene3D - 187 260 IPR013088 GO:0006355|GO:0008270
Dere01g2124 272 PANTHER GATA TRANSCRIPTION FACTOR 21 267 - -
Dere01g2124 272 SMART GATA_3 192 246 IPR000679 GO:0006355|GO:0043565
Dere01g2124 272 FunFam GATA transcription factor 187 268 - -
Dere01g2124 272 CDD ZnF_GATA 197 244 IPR000679 GO:0006355|GO:0043565
Dere01g2124 272 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 193 256 - -
Dere01g2124 272 MobiDBLite consensus disorder prediction 81 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2124 Dere-ChrDere01 35177226 35178412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2124 20 260 C2C2-Gata Transcription Factor Family AT4G32890 40.400 6.60e-44 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Dere01g2124 GATA 6.9e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2124 01 35177226 35178412 Dere02g1695 02 16859720 16864718 CCT
Dere01g2124 01 35177226 35178412 Dere01g2124 01 35177226 35178412 ECH