Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2120 ATGAATGGCGGAAACCCTACCCCAAAACAATCATTAACTAAAAAAGAATATTCAAGAGAGGTATACGAGGGCCTTAAACAACTGCATGCCATTTCTCTACCTACTTCAACTAAACAAATCCAGAAGGATACATTATTCCCAGATATTAAGCTCTCATTCTTTAAGGGAAAAGGGAGAAACCGAGAAGTGAAGAAAGAAATACTGGTGATCATGGAGATGGGGAATGTGATGGAGGGTGGTCAATGGTGCAACGCATGCTCTGACATGGTGAACCCAGCGAGTGAAGGAGAGAACAAATGCCCATTATGCGGGACAGAATTTACAGAGGTAATGGGGGACCTTAGAGACCATAGCGAAGCCATTGATTTGAGATCAACCTCTGTGTTCTCTCTTTACGGGCCGATCTTACTGGGATTGATGAATGCTCTTACCCCAGCCCTAGCAACCATTGCTTCTAGCAGCAGCAGCAGCAGCAGCAACGGTTCAAGGGAGGAGGGAGAAGAAGCTGAGCAAGACATGGAACATGGTGAGCTTGTAGTTAGGAGAAGGAGGAGAACCTCCACTTCTCTGATGCTCATCTTCCGACATCTTCATGATAGGATGGTGCAGTCTGAGTCTGATCAGAATAACGCAGAAAACGACAGGAATAGTAGTAGAAGTAGTAGTAGTAATCATAGTAATAATAATCTGAATCTCAGTATGATTGTGATTGATCCATTCAACGAAGAGGCTTTGATTCTGCGAAGTCCTTCACAAATGAACAGCGGTAGAAGCGCTCCAGTTGAGAGTCCCGTTGGGTCTCTAGGTGACTTTCTGGAGGGACCTGGTTTTGGGTTATTTTTGCAACGTTTGGCACAGAACGAACGTAATAGATATGTGAACAACGTGAGTCCTCCAGCACAGAAAGCAGCAATTGAAGCAATGCCCATGGTGAGCATAGAGGAGAAAATGCAGTGCATAATATGTCTGGAGGATGCTGAGATTGGGAGTGAAGTGAAGGAGATGCCATGTGCGCATAAGTTTCACAGTGACTGCATTATCTCATGGCTCAAGCTTCATAGTTCTTGCCCAGTTTGTAGGTTTCAGATGCCGTCTGATGATTCCAGGATTGAAACCAACGTTGAAGGCACTCAGAACAGTGACCAGGTCATGGCTAGAGAAGAAAGAATGAGATTTGGAAGAAGGAATTGGCTTTCCATATTGCAGCCCTTCGATTACTTTCTTCCTTCTCCTTGA 1236 0.4466 MNGGNPTPKQSLTKKEYSREVYEGLKQLHAISLPTSTKQIQKDTLFPDIKLSFFKGKGRNREVKKEILVIMEMGNVMEGGQWCNACSDMVNPASEGENKCPLCGTEFTEVMGDLRDHSEAIDLRSTSVFSLYGPILLGLMNALTPALATIASSSSSSSSNGSREEGEEAEQDMEHGELVVRRRRRTSTSLMLIFRHLHDRMVQSESDQNNAENDRNSSRSSSSNHSNNNLNLSMIVIDPFNEEALILRSPSQMNSGRSAPVESPVGSLGDFLEGPGFGLFLQRLAQNERNRYVNNVSPPAQKAAIEAMPMVSIEEKMQCIICLEDAEIGSEVKEMPCAHKFHSDCIISWLKLHSSCPVCRFQMPSDDSRIETNVEGTQNSDQVMAREERMRFGRRNWLSILQPFDYFLPSP 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2120 411 MobiDBLite consensus disorder prediction 201 228 - -
Dere01g2120 411 SUPERFAMILY RING/U-box 311 366 - -
Dere01g2120 411 FunFam E3 ubiquitin-protein ligase RNF181 288 366 - -
Dere01g2120 411 Pfam Ring finger domain 318 360 IPR001841 -
Dere01g2120 411 MobiDBLite consensus disorder prediction 163 181 - -
Dere01g2120 411 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 199 364 - -
Dere01g2120 411 SMART ring_2 319 359 IPR001841 -
Dere01g2120 411 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 366 IPR013083 -
Dere01g2120 411 MobiDBLite consensus disorder prediction 206 228 - -
Dere01g2120 411 ProSiteProfiles Zinc finger RING-type profile. 319 360 IPR001841 -
Dere01g2120 411 MobiDBLite consensus disorder prediction 152 181 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2120 Dere-ChrDere01 35135149 35136688 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2120 218 370 C3H Transcription Factor Family AT1G26800 35.669 1.38e-24 98.6