Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2119 ATGTCCTTTGCCATTTTACGCTTTCTGGGATGGAATCTAGTTGAAGGGGAAACGAGTTTTGATGGCAGTGAGATCTTCTGTTGCCGTATACTGTGGTTTAGCTCATCATCTGTGCTTCAGTTGTCTTCCCCTGTAGATAATTATATGCTCCCAATAAAGTGTTCCAGTGCAGTCATAAGAATCTGCTTTTCTGCATGGTCTAAACATAACCAGTTATTGCACTTTTGTAATTCTGCCACACCCTCCAGTTCAGATTACATTCAGCCAAGCCACGTTCACAATATTAATGATGTTGCTAACTATATTAACCGCCCAAGTTCAGTTTTGAGTTGCCTCTGTCCAAGATTCTATGCTTCATATGGTCCTTCTTCTTTGGTCGTTTGCTTTAAAAGGACATCATTGTTCCAACTTTCAGGGTCTTTGAATCAAGAAAAAGTAGTATTCTTCCGAAAAGCAAGAATGTACTATCATCAGCAACAACGAGCAAAGGACATCCACTCTCTAAGGGTGCCTAACCCTCCTGAGAGGCATATGATCGTCCAGGGTGGAATTGGAACTGGAGACTTAGGGCTTGTCCTCTCAACCGATGCTAAGCCTAGACTAAAATGGACACCAGATCTCCATGAACGTTTTGTAGAAGCAGTAAATCAGCAAGGAGGACCAGATAAAGCTACACCAAAAACAGTGCTGAAACTTATGGGAATTCCTGGACTTACGCTATACCATTTAAAGAGTCATCTGCAGAAGTACAGACTCAGTAAAAATCTGCATGGACAGGCCAATTGTGGCACCCATAGAAACGAAGCAGCAGGCCAAATGTCTGAGGCAAGTGGAATTCATTTGAAAATTTTAAGCATCGGACTTCAGACAAATAAAAACTTAGAAATAAATGAGGCACTACAGATGCAAATTGAAGTGCAAAGAAGGCTGCATGAGCAGCTTGAGGTACAGCGACACTTGCAGCTTCGTATAGAGGCTCAAGGGAAGTACCTCCAGGGAGTGCTGGAGAAAGCCCAAGAGACGCTAGAGAAGCAAAATTTAGGCACGGCTGGACTTGAAGCTGCCAAGGTTCAACTCTCTGAACTGGCATCCAAAGTATCTACTCAATGCATGGAGTCTGCATTTTCAGAGCTGAAAGAATTGCAGGTATTCTGGCCTCAGCATGAACTAGTAACCAAAACCAATGATTGTTCAATGGATAGCTGCCTAACCTCCAGCGAAGGATTCCAAAGAGACCAGGACACACACAACCAGGGTTTAAGTTTGAGATCCTATAATGGAACTCCATTTTTAATTGCAAAAGACGGTGCCCAAGAGCCTATGCTTCTGAAGTCTGATCTCACATTGTATGATCATCTGCAGGAGAAAATGACGTTTCTTTCCCCATCAAACAATGATGCAGAATATAGAAACTCAAAACTCATATCCATGAATGTTGGACTTGAAGGAAAAGAAAGTTTTGGGAGAATGCCTGTTTCAAAGGAATATTCAAAGGAAGAAAGCTTGTTGAAAAAGGAGAGAACTGAAATTGGGGTTGTGCCAGGTAAACTGAACCATGGGAAAATTTCTCAAGATTATAGGTTGTCTAACTTTGAAACGAAACTGGACCTAAATGTCCATGATGAAAATGATGCTTCTTCCCACTGCCAGCAGTTTGACTTGAATGGTTTTAGCTGGAACTACTAG 1686 0.4193 MSFAILRFLGWNLVEGETSFDGSEIFCCRILWFSSSSVLQLSSPVDNYMLPIKCSSAVIRICFSAWSKHNQLLHFCNSATPSSSDYIQPSHVHNINDVANYINRPSSVLSCLCPRFYASYGPSSLVVCFKRTSLFQLSGSLNQEKVVFFRKARMYYHQQQRAKDIHSLRVPNPPERHMIVQGGIGTGDLGLVLSTDAKPRLKWTPDLHERFVEAVNQQGGPDKATPKTVLKLMGIPGLTLYHLKSHLQKYRLSKNLHGQANCGTHRNEAAGQMSEASGIHLKILSIGLQTNKNLEINEALQMQIEVQRRLHEQLEVQRHLQLRIEAQGKYLQGVLEKAQETLEKQNLGTAGLEAAKVQLSELASKVSTQCMESAFSELKELQVFWPQHELVTKTNDCSMDSCLTSSEGFQRDQDTHNQGLSLRSYNGTPFLIAKDGAQEPMLLKSDLTLYDHLQEKMTFLSPSNNDAEYRNSKLISMNVGLEGKESFGRMPVSKEYSKEESLLKKERTEIGVVPGKLNHGKISQDYRLSNFETKLDLNVHDENDASSHCQQFDLNGFSWNY 561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2119 561 FunFam Myb family transcription factor 197 255 - -
Dere01g2119 561 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 175 423 IPR044848 GO:0003700
Dere01g2119 561 Pfam Myb-like DNA-binding domain 200 251 IPR001005 -
Dere01g2119 561 Pfam MYB-CC type transfactor, LHEQLE motif 295 341 IPR025756 -
Dere01g2119 561 Coils Coil 297 317 - -
Dere01g2119 561 Gene3D - 197 255 - -
Dere01g2119 561 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 255 IPR017930 -
Dere01g2119 561 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 253 IPR006447 GO:0003677
Dere01g2119 561 SUPERFAMILY Homeodomain-like 197 253 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2119 Dere-ChrDere01 35127672 35133987 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2119 230 560 G2-like Transcription Factor Family AT3G04030 49.415 3.41e-85 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dere01g2119 Myb_DNA-binding 4.5e-09 CL0123