Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2116 ATGGAAGAACCGGTGGTGGTAAACAAAGGAGAAGAAGCTCTGGATTTGCCTCCGGGTTTCAGATTCCATCCCACGGATGAGGAGATCATCACTTACTATCTGACGGAGAAGGTCATCAATAGCAGTTTCAGTGCAACTGCTATTGGCGAAGCTGATTTGAACAAGTGTGAGCCCTGGGATCTCCCCAAGAGAGCGAAGATGGGGGAGAAAGAGTGGTTCTTCTTCTGCCAAAGAGACAGGAAGTATCCAACAGGGACGAGAACAAATAGAGCGACAGAGTCGGGGTACTGGAAGGCCACAGGCAAAGATAAAGAGATTTACAAAGGCAAAGGCAACCTCGTGGGGATGAAGAAGACCCTCGTCTTCTATAGAGGGAGAGCACCTAGAGGGGAGAAAACTAACTGGGTTATGCATGAGTTCCGATTGGAAGGCAAATTCGCTACTTACAGTCTCCCCAAGGTTGCCAAGGATGAATGGGTTGTGAGCAAGATTTTCCACAAGAACACTGATGTCAAAAAGACCCCTATTGCGGAGCTTCTGAGGACGAACTCTCTGGGCGATGATCTGCTGGATTGTTCTTCACTCCCGCCTCTCATGGACCCTCCTTCTAGTAACACCGACAAGCCCGGCTACAGCGGGGGCGATGAATTCAAGGGGTCCAACCTGCAGCCATCATCGGACGGCTATTATCTCCCCAACTTCTCCATCAACAACACCAACAACAGTCATAATCAGGCGATGATGATGAAGGCAGAAGACCGCAGAGACTATGAGATGATCATCCCCAATTATTACTACACCAACTATCCACTCTCACAACCTCAGATTGGAGGAATCCAGAGTCCCAGTGTGTGCCTCCAGCAAAATAATGTGTTGTCAAATTATAGGAACAGTAGTGTTGGAGTCGGAGGAGTGATGAAGAACGAAAACATGTCGTGGGGATTGGATAAACAGTGCAATATGGAGCATTCGGTGGTGAGTGTGTCGCAGGACACCGGCCTTAGCAACGACAGAAACACCGAAACTTCGTCGGCGGTTTCCATGAGGCGGGACATGGGAAGTAACAAGGCAGTGTACGAGGATGATCTCATCCAGGCTGCGTCACTTGGCCCCCTTTCAGATTTGGATTGCCTCTGGGATGACTACTGA 1149 0.4943 MEEPVVVNKGEEALDLPPGFRFHPTDEEIITYYLTEKVINSSFSATAIGEADLNKCEPWDLPKRAKMGEKEWFFFCQRDRKYPTGTRTNRATESGYWKATGKDKEIYKGKGNLVGMKKTLVFYRGRAPRGEKTNWVMHEFRLEGKFATYSLPKVAKDEWVVSKIFHKNTDVKKTPIAELLRTNSLGDDLLDCSSLPPLMDPPSSNTDKPGYSGGDEFKGSNLQPSSDGYYLPNFSINNTNNSHNQAMMMKAEDRRDYEMIIPNYYYTNYPLSQPQIGGIQSPSVCLQQNNVLSNYRNSSVGVGGVMKNENMSWGLDKQCNMEHSVVSVSQDTGLSNDRNTETSSAVSMRRDMGSNKAVYEDDLIQAASLGPLSDLDCLWDDY 382
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2116 382 Gene3D NAC domain 25 172 IPR036093 GO:0003677|GO:0006355
Dere01g2116 382 FunFam NAC domain-containing protein 100-like 25 171 - -
Dere01g2116 382 Pfam No apical meristem (NAM) protein 17 142 IPR003441 GO:0003677|GO:0006355
Dere01g2116 382 MobiDBLite consensus disorder prediction 193 222 - -
Dere01g2116 382 SUPERFAMILY NAC domain 12 168 IPR036093 GO:0003677|GO:0006355
Dere01g2116 382 ProSiteProfiles NAC domain profile. 16 167 IPR003441 GO:0003677|GO:0006355
Dere01g2116 382 MobiDBLite consensus disorder prediction 328 348 - -
Dere01g2116 382 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 15 272 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2116 Dere-ChrDere01 35110715 35112242 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2116 1 353 NAC Transcription Factor Family AT5G18270 50.949 1.24e-112 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dere01g2116 NAM 1.3e-39 No_clan