Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2108 ATGAACGACCTAATGACCAAATCATTCACCAGCTACGTGGATTTGAAGAAAGCCTCCATGAAAGATGTAGATCTAGAAGCTGGTCTTCCTCCCAACGACGTAGAACTGAGCTCTTCAACAACCCGCATGGATACTGACATGGGTCTCTTCCTGGAAGAGGCAGAGAAGGTGAAAACAGAGATCGGTCATCTCCAAGAAATACTGAGCAGGCTTCAGCAGGCCAACGAAGAGAGCAAATCTCTTCACAAGCCTGAAGCCCTAAAATCCTTAAGGAACAAGATCAATGCTGACATTTTAACTGTGCTCAAGAAGGCTAGAACCATCCGGTCTCAGCTGGAAGAGATGGACCAAGCCAATGCTGCTAATAGGAGGCTTTCTGGGCTCAAAGAAGGAACCCCAGCCATTTACAGGACCCGAATCGCTGTTACCAATGGACTCCGCAAGAAACTAAAAGAGATTATGATGGAGTTTCAGGGATTGAGGCAGAGGATGATGACGGAGTACAAAGACACAGTGGGAAGACGCTATTTTACAGTAACAGGGGAATACCCAAATGAAGAAGTCATAGAGAAGATCATCTCCAACGGAGATGAGGAGTTCTTGAGCAAGGCTATACAAGAGCACGGTAGAGGGAAGGTTCTAGAGACAGTGGTGGAGATACAAGACAGGCACGACGCAGCTAAAGAGATTGAGAAGAGTCTGCTGGAGCTGCACCAGGTGTTTCTGGATATGGCTGTGATGGTGGAGGTACAGGGTGAGAAGATGGATGACATTGAGCACCACATGCTTCATGCTTCCCATTATGTCAAGGATGGGACTAAGGATCTGCAGACTGCAAAGAAATATCAGAAGAGAAGTAGAAAGTGGATGTGTCTTGGATTGATACTTCTCCTGATTCTGATTCTCATGATTGTCACCTCCATTGCCACCAGTTTCAGCAGTTCTTGA 948 0.4641 MNDLMTKSFTSYVDLKKASMKDVDLEAGLPPNDVELSSSTTRMDTDMGLFLEEAEKVKTEIGHLQEILSRLQQANEESKSLHKPEALKSLRNKINADILTVLKKARTIRSQLEEMDQANAANRRLSGLKEGTPAIYRTRIAVTNGLRKKLKEIMMEFQGLRQRMMTEYKDTVGRRYFTVTGEYPNEEVIEKIISNGDEEFLSKAIQEHGRGKVLETVVEIQDRHDAAKEIEKSLLELHQVFLDMAVMVEVQGEKMDDIEHHMLHASHYVKDGTKDLQTAKKYQKRSRKWMCLGLILLLILILMIVTSIATSFSSS 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2108 315 ProSitePatterns Syntaxin / epimorphin family signature. 223 263 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dere01g2108 315 SMART tSNARE_6 212 279 IPR000727 -
Dere01g2108 315 CDD SynN 47 204 IPR006011 GO:0016020
Dere01g2108 315 PANTHER SYNTAXIN 45 299 IPR045242 -
Dere01g2108 315 FunFam Qa-SNARE, Sso1/Syntaxin1-type, SYP12A-group 44 175 - -
Dere01g2108 315 SUPERFAMILY t-snare proteins 45 272 IPR010989 GO:0016020|GO:0016192
Dere01g2108 315 SMART SynN_4 42 169 IPR006011 GO:0016020
Dere01g2108 315 Gene3D - 43 172 - -
Dere01g2108 315 Gene3D - 213 312 - -
Dere01g2108 315 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 217 279 IPR000727 -
Dere01g2108 315 CDD SNARE_syntaxin1-like 216 278 - -
Dere01g2108 315 FunFam Syntaxin 132 210 310 - -
Dere01g2108 315 Pfam SNARE domain 254 305 IPR000727 -
Dere01g2108 315 Pfam Syntaxin 50 252 IPR006011 GO:0016020
Dere01g2108 315 Coils Coil 54 74 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2108 Dere-ChrDere01 35022124 35023071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2108 1 315 SNARE and Associated Proteins AT1G08560 66.981 1.21e-142 403