Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2087 ATGAGTTTTCAAGATATTCAAGGTGAGGCTAAGCCACCCAGTGGCCGAATTCAGTCGCCGTCGCAGGCTGTGGCTGCCGGAATTTTCCAGATCAATACGGCCGTCGCTACTTTCCGGCGACTCGTTGATGCCATTGGAACCGTCAAAGACACATCTGAGCACCGTCTGAAGTTGCACAATACGAGGCAGCGGATATTGCAGCTGGTGAAGGATACTTCTGCTAGGCTCAGATCCTTGAGCGAATCTGATCGTCTCGCCGATGCCAGTCCTAGTAAGAAAATTGAAGATGCTAAGCTGGCGAGAGATTTCCAAACAACATTGCAAGAGTTCCAGAGAGTACAACAGCTTGCTTCTGAGCGCGAGTCTACTTACACTCCAGCTGCCCCTCCATCTTCTCTACCAACAAGCTCTGGTTCTGGTGAAGAATCGGTTGACATAGATCAAGAAAGCCAACCTTTTATCAGAGAACAGAAGAGGCAGGAGATACTCTTATTAGATAATGAAATCGCTTTCAATGAGGCCATGATTGAAGAAAGAGAACAGGGCATTAGAGAGGTAGAGGAGCAAATCGGACAGGCAAACGAAATATTCAAGGACCTAGCTGTTCTGGTTCATGAGCAGGGTGTAGTTATTGATGATATTCAATCAAATATCGATGCTTCGGCCGGTGCAACAACTCAAGCTAAAGCACAGTTAGCCAAGGCTTCCAAAAATGTGAAATCTAGATTCTCATGGTGTTGGTGGGTGCTTATAATTTTAGTGTTAGTGATGGTCATCTTCCTTCTTGTTCTCATTATTTAG 801 0.4569 MSFQDIQGEAKPPSGRIQSPSQAVAAGIFQINTAVATFRRLVDAIGTVKDTSEHRLKLHNTRQRILQLVKDTSARLRSLSESDRLADASPSKKIEDAKLARDFQTTLQEFQRVQQLASERESTYTPAAPPSSLPTSSGSGEESVDIDQESQPFIREQKRQEILLLDNEIAFNEAMIEEREQGIREVEEQIGQANEIFKDLAVLVHEQGVVIDDIQSNIDASAGATTQAKAQLAKASKNVKSRFSWCWWVLIILVLVMVIFLLVLII 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2087 266 MobiDBLite consensus disorder prediction 114 150 - -
Dere01g2087 266 FunFam Syntaxin-22 like 166 266 - -
Dere01g2087 266 SMART SynN_4 9 122 IPR006011 GO:0016020
Dere01g2087 266 Pfam SNARE domain 210 261 IPR000727 -
Dere01g2087 266 CDD SNARE_Qa 176 234 - -
Dere01g2087 266 FunFam Syntaxin-22 like 15 128 - -
Dere01g2087 266 Gene3D - 8 130 - -
Dere01g2087 266 SMART tSNARE_6 168 235 IPR000727 -
Dere01g2087 266 PANTHER SYNTAXIN 22 254 IPR045242 -
Dere01g2087 266 SUPERFAMILY t-snare proteins 17 228 IPR010989 GO:0016020|GO:0016192
Dere01g2087 266 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Dere01g2087 266 Coils Coil 176 196 - -
Dere01g2087 266 MobiDBLite consensus disorder prediction 114 146 - -
Dere01g2087 266 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 173 235 IPR000727 -
Dere01g2087 266 Gene3D - 167 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2087 Dere-ChrDere01 34856591 34858586 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2087 1 253 SNARE and Associated Proteins AT5G46860 58.366 2.05e-97 285