LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dere01g2082	ATGAACCCATCTACTTCACCGTCGCCGTCCAAAGCCAAAAAGAAGCAAATGGCGACAACAAGCGCCAAGGCACAAGAGCAACCAGATGGTAAAGCATGGGGAGGAAGGTACCTGGGTGTTCGGAGGAGGCCATGGGGAAGATACGCAGCAGAGATTAGAGACCCTTCCACCAAAGAAAGGCATTGGCTTGGCACCTTCGACACAGCTGAGGAAGCTGCTTTAGCCTACGACAAAGCAGCACGCTCCATGCGCGGCTCTCGCGCCCGAACCAACTTTGTCTACTCAGATACTCCTCCTGGCACCTCCGTCACTCCCATTATCTCCCCTGATGAGGAAACCCACCAGAACCAAGACTTTTCGTCTCTCTTCGCACCAAACTCGTTTGCCGAACAACCCGACCCGGTTGATAGGCCCACGGAATGCAATCTCTCGGGTGGCTTCCTGGGGATTACGGATAATGATGTCTGGGCAGCTTCTTCGGGGGTTTCTTCCCAGCAATATCACTCACCCACCACGGACGCGCATAACATGCCTCACTTCCATCAATTGTACGATGATAACAAGACTGAGCTTCCTCCATTGCCACCGGATATTACAAGCTCCACAGGCTATGAAATGGGTCACGGATTTTACGATAATGGTTGCGGGTATTCGGATCAGAGCACGGGGATGGAATGTGAATCGTCAACGAGCTGGCCGTCTTACTCGTATATGGGCTTAGATTCGGGTGAGTACGTGCATAGCCCACTGTTGAGCACAATGCCAGCGGTGTCAGAGAAGATGCCGGAGGGTGTTGATTTGGGAAGTTCCTCATATTTCTTCTGA	825	0.5236	MNPSTSPSPSKAKKKQMATTSAKAQEQPDGKAWGGRYLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDKAARSMRGSRARTNFVYSDTPPGTSVTPIISPDEETHQNQDFSSLFAPNSFAEQPDPVDRPTECNLSGGFLGITDNDVWAASSGVSSQQYHSPTTDAHNMPHFHQLYDDNKTELPPLPPDITSSTGYEMGHGFYDNGCGYSDQSTGMECESSTSWPSYSYMGLDSGEYVHSPLLSTMPAVSEKMPEGVDLGSSSYFF	274

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dere01g2082	274	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	18	162	-	-
	Dere01g2082	274	MobiDBLite	consensus disorder prediction	1	26	-	-
	Dere01g2082	274	SUPERFAMILY	DNA-binding domain	36	94	IPR016177	GO:0003677
	Dere01g2082	274	Pfam	AP2 domain	37	85	IPR001471	GO:0003700\|GO:0006355
	Dere01g2082	274	ProSiteProfiles	AP2/ERF domain profile.	36	93	IPR001471	GO:0003700\|GO:0006355
	Dere01g2082	274	MobiDBLite	consensus disorder prediction	1	36	-	-
	Dere01g2082	274	FunFam	Ethylene-responsive transcription factor 2	36	94	-	-
	Dere01g2082	274	Gene3D	AP2/ERF domain	35	94	IPR036955	GO:0003700\|GO:0006355
	Dere01g2082	274	PRINTS	Ethylene responsive element binding protein signature	59	75	IPR001471	GO:0003700\|GO:0006355
	Dere01g2082	274	PRINTS	Ethylene responsive element binding protein signature	37	48	IPR001471	GO:0003700\|GO:0006355
	Dere01g2082	274	SMART	rav1_2	36	99	IPR001471	GO:0003700\|GO:0006355
	Dere01g2082	274	CDD	AP2	36	92	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dere01g2082	Dere-ChrDere01	34822164	34822988	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dere01g2082	17	266	AP2-EREBP Transcription Factor Family	AT5G13910	42.529	3.82e-53	170

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Dere01g2082		AP2	3e-13	CL0081