Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dere01g2080 ATGGTTGAAATAGGGTTTTTCTATGGGAAGGTTCTTCAGAATGATATTGATCTGCTAAATCCCCCGGCTGAGCTGGAGAAGAGAAAGCACAAGCTCAAGCGTCTTGTTCAGTCCCCTAACTCATTCTTCATGGATGTAAAGTGCCAGGGTTGCTTCAACATAACCACCGTCTTCAGCCACTCTCAGACCGTTGTGGTATGTGGGAACTGCCAGACTGTCTTATGCCAGCCTACAGGTGGACGGGCTAGGCTAACAGAGGGTTGCTCTTTTAGGAAGAAGGGAGACTAA 288 0.4792 MVEIGFFYGKVLQNDIDLLNPPAELEKRKHKLKRLVQSPNSFFMDVKCQGCFNITTVFSHSQTVVVCGNCQTVLCQPTGGRARLTEGCSFRKKGD 95
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dere01g2080 95 Pfam Ribosomal protein S27 39 93 IPR000592 GO:0003735|GO:0005840|GO:0006412
Dere01g2080 95 Hamap 30S ribosomal protein S27e [rps27e]. 33 93 IPR000592 GO:0003735|GO:0005840|GO:0006412
Dere01g2080 95 Gene3D - 14 94 IPR023407 -
Dere01g2080 95 PANTHER 40S RIBOSOMAL PROTEIN S27 11 95 IPR000592 GO:0003735|GO:0005840|GO:0006412
Dere01g2080 95 SUPERFAMILY Zn-binding ribosomal proteins 39 93 IPR011332 GO:0006412
Dere01g2080 95 ProSitePatterns Ribosomal protein S27e signature. 47 79 IPR000592 GO:0003735|GO:0005840|GO:0006412
Dere01g2080 95 FunFam 40S ribosomal protein S27 10 95 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dere01g2080 Dere-ChrDere01 34798697 34799432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dere01g2080 11 95 Cytoplasmic Ribosomal Protein Gene Family AT3G61110 95.294 9.21e-59 173
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dere01g2080 01 34798697 34799432 Dere01g2080 01 34798697 34799432 ECH